| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_0427 |
|---|
| Symbol | |
|---|
| ID | 5668850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. EAN1pec |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009921 |
|---|
| Strand | + |
|---|
| Start bp | 502903 |
|---|
| End bp | 503844 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641239359 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001504798 |
|---|
| Protein GI | 158312290 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCA CGCTGCTGAA GAACCTCGCG CGCTCGCTGG CCGTGCTGCT GGTGGTCACC
TTCGCCACGT TCACGCTGAT GTTCGGTAAC GGGGACGGCA TCGCCCGGGC GGTGCTGGGC
CTGAACGCCC GGCCGGAGGA CGTCCAGCGT GAGGTCGTCA CTCTCGGTCT CGACCAGCCG
CTGCTGGTGC AGTACTGGCA TTGGCTGCGC GACGCGGTCA CCGGCGACCT CGGCGAGTCG
TTCTACACCG GACAGTCGGT GACCGAGGCG CTCTCGTCGA GGGTGCCGGT CACCCTCGCC
CTGGTGATCA TCACCCTGCT CCTGGCGGTC GTGCTCAGCG TGCTGCTCGG CGTCACGGCC
GCCGTCAAGG GCGGCTGGGT CGACCGTCTC CTGCAGTTCG TGACCGTGCT GGGCACCGCG
ATCCCGTCGT TCATCATCGC CATCGTCCTG GTCTTCACCT TCGCCATCGC CTGGCGGGTG
CTGCCGGCCA CCGGCTACGT CACGCCCGAG ATCAGCGTCT CGGGCTGGGC GAAGTCGGTG
ACCCTGCCGG TGCTGGCGCT GCTGGTCGGT GCGGTGGCCA GCGCGGCCGC GCAGTTCCGG
ACCGCGGTGC TGGACACGCT GGGCCGTGAC TACATCCGTA CGTTACGGGC CCGCGGGATC
AGCGAACGGC ACGTGATCTT CCGGCACGTG CTGCGCAACT CCGCCGGACC CGGTCTGACA
GTGCTCAGCC TGACCACGCT GGGCCTGCTG GGCGGGGCGG TCTTCGTCGA GCAGGTGTTC
GCGCTGCCCG GCATGGGCCA GCTGGCCAAC CAGTCGGCCC AGGTCAACGA CGTGCCCATG
GTGATGGGCA CCGTGCTCGT GACGATCGTG ATCGTCCTGG TCGTGAACTT CCTCGGTGAC
CTGGCCACCA CTGTGCTGAA CCCGAAGGCG AGGATCCGAT GA
|
|---|
| Protein sequence | MMLTLLKNLA RSLAVLLVVT FATFTLMFGN GDGIARAVLG LNARPEDVQR EVVTLGLDQP
LLVQYWHWLR DAVTGDLGES FYTGQSVTEA LSSRVPVTLA LVIITLLLAV VLSVLLGVTA
AVKGGWVDRL LQFVTVLGTA IPSFIIAIVL VFTFAIAWRV LPATGYVTPE ISVSGWAKSV
TLPVLALLVG AVASAAAQFR TAVLDTLGRD YIRTLRARGI SERHVIFRHV LRNSAGPGLT
VLSLTTLGLL GGAVFVEQVF ALPGMGQLAN QSAQVNDVPM VMGTVLVTIV IVLVVNFLGD
LATTVLNPKA RIR
|
|---|
| |