| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4532 |
|---|
| Symbol | |
|---|
| ID | 3907509 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 5410599 |
|---|
| End bp | 5413253 |
|---|
| Gene Length | 2655 bp |
|---|
| Protein Length | 884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637881865 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_483607 |
|---|
| Protein GI | 86743207 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.796948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGAGA AGGGACCCGG GCGGCGCCGT CGTGGACCTC GTTGGGCGGC GATGCTCGCG
GCGCTGGCCC TGTTCGCCGT GGCCGTGCCC GGGGTCTGCG CGGCCTCGGC TTCGGCTTCG
GCCCCCGCGT CGGCCGGGGG AGTCCTCGTC GAACCGGTTA CCCACCACGG TTCATCTACA
AGAACACCAC GATCTTCCGC ATCTTCATCC ACCGATAAAT CGAATAATTT GCCATCTATC
ACTCCGGATA ACACGGCAGC CAGGCCCGGT GGTTCGCCGA ACCCGGTGAC GATTGATCTG
GATGAGGTAA GTCCCCCCAC CCCGGGGGGC TCGACCATGC TCTCCGTCAG CGGCCAGCTC
ATCACCACGG TCGGGGAGCC GCTGGCCCAC CTCTCCATGA GCCTGTGGAT AGGCGCCAGG
GTGACCTCAC GCGGGCAGCT GGCCACCCTG ACCGATGACC CGGCCACGGC GAGAACACGC
AGCTACCGCC AGGTGGTCCT CGCGAACGGC GACGGCACCC AGCCGCTGGC CGCCCCGCCC
ACCCAGGGTG CCGCGCCCGT GCCCTTCCGG ATCGCCACCG ATCGCGCCGC GCTGGACCTG
CCGCCGAGCC TGGGGGTGTA CCCGATCCAG CTACGGATTA CCGGCTCCGT CGGGGGCCGC
GCCGTGGCAC CGATCGGCGC GGCCTACACC TTCCTGGTCT GGGCGCCGAA TCCGCAGCAG
CCGAGGACGC CGATCGCAGC GGTCCTGCCG ATCGCAGATC AGCCGCGCCT GCGCTCGGAC
GGCAGGCTGA CCGACAACGC GCTCGCGGAC GAGGTGAAGC CGGGCGGCCG GCTGTCCCGG
CTGCTGACCG CCGCCGCGCC GCCGGTCACG CTCGCCGTCG ATCCGACCCT GGTGCAGGCG
CTGACCATCA TGGCGCAGCC GGGCGGCTAC GACTACGCCA CCCCGGGCGG GCCCGTTCAT
GCGCAGGCGA ACGCCGATGC GGCCCTTTTT CTCTCCGACA TCGTGCGCTT CGCCGAGCAC
GGAGGCATGG TGTTCGCGCT GCCCTACGGG GATGCCGATC TGACCGCGCT CGTCCACGCC
CGGAAGCTGG ACACGATGAA GTACGCCGTC AAGACTGGCG AAGTTGTGCT GGCCCAACTG
TTGGGGCGTG CCCCTCTACA GAAGGGCACC ATCGCATACC CTGCCGACGG GTCGGCGGAC
GCCACCACCG TGGACGTACT GCGCCAGCTG GAGGTCGGGA CCGTGATCCT CGATGACCAG
CTGCTACCCC CCGCGACGAA GATCACCTAT ACTCCGTCAG CGACCGTCAG CCTCGCCACC
TCGGCCGGAC CGATCCAGGC GCTCGCGGCC GACCGCCGGC TCACCAGGAT CGCAACCGCC
TACACCGGGC TGCCCGACGG TCCCGACTTC GGGACGGCCC TGGCACGCCT GCGGGCCGAG
CTCGGCATGA TCACCGCCGA ACGACCCGAG CAACGGTTCC AGGTCCTGGC GCTGCCCCGG
GACTGGGATC CGCCGAGCGA CTGGGCACGG TCGGTACTCG ACACCCTCAC CAGCGGCTAC
TCCATCTCGG TGGGACTCGA CGCAGGTGCC GGGGGCCAGG GCCGGCCGGC CGACCGGCCG
GGCCGGCTCG TCTACCCGGC CGAGGCACAG GCCCGCGAAC TGCCGGCCAA CTACCTCACC
GCCGTCGAGG ACGTCCTCGA CGAGGTGCAG GCCCTGAGCC CCGTGCTGTG CCCACCCAGG
CGCGGTCCCA GGTGCCAGCT GCAGCTCATC AACCCGATGA AGAACGCGCT TGTCACGGCG
GCCTCCGCCG CGTGGCGGGG AGACCGCAGG GTTGACGGTG TGTCGTTGAG CCAGCAGGTG
GACGGGGAGG CGTCCGCGAT CCGCAACGGA ATCCAGGTGG TGGCCTCCCG CAGCGTCAAC
CTGACGAGCA AACGTGGGCT GGTCCCGATC ACCTTGGAGA ACAACACCCA ATACGAGGTC
ACTGTGGTGC TCGCCTTCTC TTCGACCAAC CGGTCCCGGC TGCGCTCGCC AGCCCGGCAG
ACACTCCGCC TTCCCCCAGG GCAGAAGGCT CAGGTCGAGA TCGGGATGGA GGCCGAAGGC
GCGGGAACGT TTCCCCTCGA GATCCGCAAA CTCAACCTCG ACGGGCAGGC GCTGTCCAAG
GAACCACCGA ACCGGGTTCT CGTCCGATCC ACCGTCTACG GCGCCATCGC GACCGCGATC
ACCATCGGTG CCATCGGCGT GCTGCTCCTG GCGGTCATCA TCCGCCTGGC GCGACGGCTA
CGGGCCCGCC TGCGTGGGGC CGAGGACGAC CTGGGTAGAC CGGCGGGTCC GCACGAGGCT
ATGACCGGGC CGACTGCCCC GCTCTACCCG GTGAACCAGG TGAACCAGGT GAACCAGGTC
GATCCGGTCG CCCCCGCCGG TCCGCTCACC CCCGCCGGTC CGCTCACCCC CGCCGCCTCG
GTCTCGACCC GGCATAGTGG CGACGACGAG CGCGAAGCCG CCACCTCGAC TACGACGACG
CCGGTGGTAC GGACGGCCGT CCGGCGCTAT GACGACCAGG ACCGAGACAC CCTTCGCCAC
GGCCTCGACA GCCAGGAGGA CACCGGCGAC TCGGCGGCCA CAGCTCCCTT CCGACGGCGA
CGGAGCGGCC CATGA
|
|---|
| Protein sequence | MREKGPGRRR RGPRWAAMLA ALALFAVAVP GVCAASASAS APASAGGVLV EPVTHHGSST
RTPRSSASSS TDKSNNLPSI TPDNTAARPG GSPNPVTIDL DEVSPPTPGG STMLSVSGQL
ITTVGEPLAH LSMSLWIGAR VTSRGQLATL TDDPATARTR SYRQVVLANG DGTQPLAAPP
TQGAAPVPFR IATDRAALDL PPSLGVYPIQ LRITGSVGGR AVAPIGAAYT FLVWAPNPQQ
PRTPIAAVLP IADQPRLRSD GRLTDNALAD EVKPGGRLSR LLTAAAPPVT LAVDPTLVQA
LTIMAQPGGY DYATPGGPVH AQANADAALF LSDIVRFAEH GGMVFALPYG DADLTALVHA
RKLDTMKYAV KTGEVVLAQL LGRAPLQKGT IAYPADGSAD ATTVDVLRQL EVGTVILDDQ
LLPPATKITY TPSATVSLAT SAGPIQALAA DRRLTRIATA YTGLPDGPDF GTALARLRAE
LGMITAERPE QRFQVLALPR DWDPPSDWAR SVLDTLTSGY SISVGLDAGA GGQGRPADRP
GRLVYPAEAQ ARELPANYLT AVEDVLDEVQ ALSPVLCPPR RGPRCQLQLI NPMKNALVTA
ASAAWRGDRR VDGVSLSQQV DGEASAIRNG IQVVASRSVN LTSKRGLVPI TLENNTQYEV
TVVLAFSSTN RSRLRSPARQ TLRLPPGQKA QVEIGMEAEG AGTFPLEIRK LNLDGQALSK
EPPNRVLVRS TVYGAIATAI TIGAIGVLLL AVIIRLARRL RARLRGAEDD LGRPAGPHEA
MTGPTAPLYP VNQVNQVNQV DPVAPAGPLT PAGPLTPAAS VSTRHSGDDE REAATSTTTT
PVVRTAVRRY DDQDRDTLRH GLDSQEDTGD SAATAPFRRR RSGP
|
|---|
| |