| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_4401 |
|---|
| Symbol | |
|---|
| ID | 3907376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 5261528 |
|---|
| End bp | 5264041 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 637881732 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_483476 |
|---|
| Protein GI | 86743076 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.433686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCTTG TGGACTGGTT GCGTGCGCTT CCGGATCAGG CGTTGACCCG GCTCTTCCTC
CTACGGCCGG ACCTGGCGAC GCCGCCCCCA CCGGACTTCG AGGTGCTTGC GGCCCGCCTG
GAGATCCGGG TCAGCGTGGC CCGCGCGTTG GAACGTCTCG ACACGGGCGC CTGCGAGCTC
CTGGAGGCGT TGACGATCCT TCCCCGGCCG GTGTCCCTGG CGGAGCTGAC AAGGTTCTGC
GGGCATTCGG AGGTGTCCGA GCCGGTGGGC CGGCTTCGTG ACCTCGGGCT CATCTGGGGC
GACGATGCCG AGCTGCGGGT CACCGGGATG GTCGTCGACC TCCTCGGCGT GCGCCCGCTG
GGGCTCGGCC GTCCCGTGCG AGCCTGCCTG ACGACGTACC GGCAGTCCCA GCTCGCCCGG
CTCCTGACCG CGGCCGGCCT GCCGGTGCCC CGGGGCGCGG TCGACGAGAC GACGACCGGG
GTCGCCGTCC GGGAAGCGAT GATCGACGCG TTGAGCGACG CCTTCGCGGA CGCGGATCGG
GTGCGGGAGT GGATCGAGAC CTGCTCCTCC CGGGCGCGGC AGCTGCTGGA CCGGCTGGCC
GCGGGTCCGG CGCTCGGCGC CACCACGGAG GCGGGCCGGT TGCTGGGGGT GTCCGCGGCC
CGAACCCCGG TGGAGGAACT ACTCGCCCGC GGCCTGCTCG TCGGATTGGA CGAGGAGACC
GTCGAGCTGC CGCGCGAGGT TGGGCTGGTC GTGCGCGGCG AGCATCCGGC CGGGGTCCTG
CACCCGCATC CGCCCGCCGT CGAGGGAGAG GTCGTCGGGG TGGCGGCGGT TGACGCCGTG
GCGGCCCTGG CGGCGGACAC CCTCGTCCGG TGGGTCACCA CCCTGCTGGA CGCTTGGGGC
GCGAGCCCGG TCACTCCGCT GCGCACCGGC GGGTTGAGCG TGCGGGACCT GCGGGCCGCC
GCGAAACTGC TCGACGTTGA CGAGCGGACC GCGGCCTTCG TGGTGGAGCT GGCCGCGGCG
GCCGGCCTGG TTGACGCGAC CGCGGGGGTT GACGTCCAGT ACGTGCCGAC CACGGCCTAC
GACCGCTGGG GCACCGACCT GGTGGCGGCC CGGTGGGCCG TACTGGTCGA GGGCTGGCTG
CGCTCGCCGA CCGCCGCCTG GCTGGTCGGC GAGCGGGACG AACGGGGCCG GCAGATCGCT
CCCCTGTCGC TGGACGTGCG GCGGCCGGCC GTGCAGGACC TGCGTGCCCA GGTCCTGCGG
GCGCTGGCCG CGGCGCCCGC AGGGGTGGTG CCGACCGCGG AGTCGTTGCG TGCCCTGCTG
ACCTGGCGAG CGCCCCGGCG CGGCGGAATG CTGCTCGCCG GGATGATCGA CGGAACGATC
GTCGAGGCCG AGCTGCTCGG GCTGACCGGC CGGGGCGCGC CGAGCACGGT CGGTCGGTTA
CTCGCCGCCC AGCTCGACGC GGAGAACGCC GATCCGACGC GGAACGTGGG CGTGCCGAGC
CGATCGGCGG CTGGTGATCC AGGGCTGTGC GTCAGGCTCG CCGACGCGCT TGCGCCGCTG
CTGCCCGAGC CGGTCGAGGA GCTGCTGCTG CAGGGGGATC TCACCGCGGT TGCCCCGGGC
CCGCTGGTAC CCCGGGTGGC TGCGGAGCTG GCGCGGATGG CGGATGTCGA GTCCGCGGGC
GCGGCCACCG TCTATCGGTT CTCCGAGGCC TCGCTGCGTC GCGGCCTGGA CTCGGGCCTG
GTAGCGGAGG ACATCCACGC GATGCTCGTC CGTCTCGGTC GAGGCGGGGT GCCGCAGGCC
CTCACCTATC TGATCGACGA CACCGCCCGG CGGCACGGCC GGTTGCGGGC CGGTCCCGCC
GCGAGCTACC TGCGCTGCGA GGACACGGCG CTGCTCGCCG AGGTGGTCGC CAACCGGCGT
ACCCAGGCGT TGGGGCTGCG CCGGATCGCG CCGACGATCG TCATCTCCCC ACTGCCGACC
GCGGAGATGC TCGCCGGCCT GCGCAACGCC GGGTTCGCCC CGGTCGCGGA GGCCCCGGAC
GGGCGGGTGG TGCTGCGCCG GCCCGCCGCC CATCGGACGC CGGCGCGTCC CCGCGCGGCG
TCGGTCGACG TGGCCGACAC CCGGATCAAC CAGCTGCGCG ACGTGGTCCG GCTGGTCCGC
CGGGGCGACG ACAGCGCGCG GGCGGTCCGG GCGGCCGGCG AGGTTCCCGG CATCGAGGTC
GGGCTCACCC GGTCCGCGCC GTTGATCCTG GTGCTGCTGC AGGGAGCCGT CCGGGACCGG
CGCCGGGTGC TGCTGGGCTA CGTTGACCAG CAGGGTGCGC CGAGCGACCG GATCGTGCGG
CCCACCGTCG TCGAGGGCGG CTGGCTCACC GCGTGGGACG AACTCAGCGC CGGCCCGCGT
CGTTTCGTCC TGCACCGGGT GACCGGCGTC GCTGACATCG ACGACGCGTT CGGCGGACCG
CCGGTGGCGG CGGACTGGTC GGCCGCCGCG GAGGATCTCG CCGATCCGCC ATGA
|
|---|
| Protein sequence | MTLVDWLRAL PDQALTRLFL LRPDLATPPP PDFEVLAARL EIRVSVARAL ERLDTGACEL
LEALTILPRP VSLAELTRFC GHSEVSEPVG RLRDLGLIWG DDAELRVTGM VVDLLGVRPL
GLGRPVRACL TTYRQSQLAR LLTAAGLPVP RGAVDETTTG VAVREAMIDA LSDAFADADR
VREWIETCSS RARQLLDRLA AGPALGATTE AGRLLGVSAA RTPVEELLAR GLLVGLDEET
VELPREVGLV VRGEHPAGVL HPHPPAVEGE VVGVAAVDAV AALAADTLVR WVTTLLDAWG
ASPVTPLRTG GLSVRDLRAA AKLLDVDERT AAFVVELAAA AGLVDATAGV DVQYVPTTAY
DRWGTDLVAA RWAVLVEGWL RSPTAAWLVG ERDERGRQIA PLSLDVRRPA VQDLRAQVLR
ALAAAPAGVV PTAESLRALL TWRAPRRGGM LLAGMIDGTI VEAELLGLTG RGAPSTVGRL
LAAQLDAENA DPTRNVGVPS RSAAGDPGLC VRLADALAPL LPEPVEELLL QGDLTAVAPG
PLVPRVAAEL ARMADVESAG AATVYRFSEA SLRRGLDSGL VAEDIHAMLV RLGRGGVPQA
LTYLIDDTAR RHGRLRAGPA ASYLRCEDTA LLAEVVANRR TQALGLRRIA PTIVISPLPT
AEMLAGLRNA GFAPVAEAPD GRVVLRRPAA HRTPARPRAA SVDVADTRIN QLRDVVRLVR
RGDDSARAVR AAGEVPGIEV GLTRSAPLIL VLLQGAVRDR RRVLLGYVDQ QGAPSDRIVR
PTVVEGGWLT AWDELSAGPR RFVLHRVTGV ADIDDAFGGP PVAADWSAAA EDLADPP
|
|---|
| |