Gene Francci3_3295 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFrancci3_3295 
Symbol 
ID3904081 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFrankia sp. CcI3 
KingdomBacteria 
Replicon accessionNC_007777 
Strand
Start bp3900857 
End bp3901765 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content69% 
IMG OID637880620 
Product6-phosphogluconate dehydrogenase, NAD-binding 
Protein accessionYP_482381 
Protein GI86741981 
COG category[I] Lipid transport and metabolism 
COG ID[COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0887109 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCG AGGGCGGTCT GTCTCCTGGG ACGGTCGTCG GCCTTGGCCC GATGGGTCGG 
GCAATGGCCG CGTCCCTGTT GCGGTCCGGC CATCCGGTGA CAGTGTGGAA CCGCACCGAG
GGGCGCGCCG ACGACCTCAT CGTCAGGGGC GCCACGCTGG CACCCACAGC GACAGCCGCG
GTCGCCGCCA GCGAGCTGAC CATCCTCAGC CTCACCGACT ACCAGGCGAT GTACGACATC
CTCGACCCGG TCGCCGAAAG TTCGCGACCC TCCGCTGTCC TTGCCGGCAA GGTCCTGGTC
AACCTCAGTT CGGACACCCC CGATGCCTCC CGGGATGCGG CGGGATGGGC GGCCAGACAC
GGAGCGAGCT TCGTGACAGG AGGCGTCATG GTGCCCGCTC CCGCCGTCGG CGGTCCAGGG
GCACATGTGT TCTACAGCGG GCCCCGCGCG GTATTCGACA TACACGAACC GACGCTCAGA
CTGATCGGCG AGCCCCGGTA CCTCGGGGAG GACCCAGGCC TGGCCCAGCT CTTTTACCAG
GCGCACCTCG ACGTCTTCCT CACCGCCCTG TCAAGCCTGC TCCACGCCAC CGCGCTCGTC
ACCGCCGCCG GTGTCCCGGC CGCCGACTTC CTACCCGGCG CGCTGAACAC CCTCACCGAC
ATCCCGACGA TGATCGGAGA CGGATGGGAC CTGGCCCGGC GCCTGGAGGC CGGCGAACAC
CCCGGCGACC TCAGCACGGC ACGGATGATG GGCGCCACAG CGAACCACAT CGTGTGGACG
AGTGAGAAGG CCGGCATCGA CACACAGCTG CCCAAAGCCG TCAAGGCGCA CTACGACCAG
GCCGTCACCG CGGGCCGCGG CACCGAGAAC TGGACCGTTC TCTACGAGAT GCTCAAAGGC
TGCGACTGA
 
Protein sequence
MSGEGGLSPG TVVGLGPMGR AMAASLLRSG HPVTVWNRTE GRADDLIVRG ATLAPTATAA 
VAASELTILS LTDYQAMYDI LDPVAESSRP SAVLAGKVLV NLSSDTPDAS RDAAGWAARH
GASFVTGGVM VPAPAVGGPG AHVFYSGPRA VFDIHEPTLR LIGEPRYLGE DPGLAQLFYQ
AHLDVFLTAL SSLLHATALV TAAGVPAADF LPGALNTLTD IPTMIGDGWD LARRLEAGEH
PGDLSTARMM GATANHIVWT SEKAGIDTQL PKAVKAHYDQ AVTAGRGTEN WTVLYEMLKG
CD