| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1536 |
|---|
| Symbol | |
|---|
| ID | 3904768 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1844171 |
|---|
| End bp | 1845244 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637878873 |
|---|
| Product | LuxR family transcriptional regulator |
|---|
| Protein accession | YP_480641 |
|---|
| Protein GI | 86740241 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.413488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCATGA CTCTTACACT GGCTATTCCT AGCCGTATGC AAACTGTTCT GCCTCGGGCG
CTCGCGCGCC TGCGGGCCTC ATCGGGTGCA CACATTACTT TCGGGGGAAT GGTCGCACTC
CATTCCCGCA CCCTGACCAT CACCAACGTG GACGGGCCGG GGCCGGCCGG GCTGATCGGT
GTCGAGATCC CGTCCGGGAT GGGCATCGGC GGTCAGGTCG TCAAGCATTG CCGGCCGGTC
GTCATCAACG ATCGAGCTGC CGCGCGAAGA GCGCTGCGAT CCACCGCCGC GGAGATCGAC
GACACCGGTC TCGGTGCGAT CATGGCGGTG CCGGTGTGCG AGGACGGCGC GGTGGCCGCG
GTACTGTACG CCGCTGTCGA ACCGGATCTG TCATTCGATG AGTCGGCTAT TCACGCGGCC
ATGGCGGTGG CCCGGTTGAT GGAGCGCGAA CTCGGTCTCG TCAGTGGGGG GCCGCGGTCG
AGAGTGCCGT CGGTACCGGT CCAGGGGCGG GTACCGGTCC AGGGGCGGGT GCCGGTCGAG
GGGCGGGTGC CCGTTCAGGG CGGGGTGCCG GTCGAGGGGC GGGTGCCCGT TCAGGGCGGG
GTGCCGGTCC AGGGGCGGGT GCCGGTCCAG GGGCGGGTGC CCGTTCAGGG CGGGGTGCCG
GTCGAGGGGC GGGTGCAGGT GCCGATCCAG GGCGGGGTGC CGGGGGCCGT CCCGTTTCCG
CGGATGCCGG GTCTGCCCCG GGAGAGCCTG CGGCTGGCCT ATCGGGAGCT TCAGGAGGTC
ACCGAGCATG TCGCCGATCC GTTTCTGCGT GGTCGCATCG GCGGGGTGTC CGAGCTGCTG
CGCGGGCTGC TCGCCGAGGA AACGAAGACG GTCGGACGGC TGACGCTGAC CCCGCGCGAG
TTGGAGGTGC TTGCCCAGGT CTCGTTGGGA TTGTCCAACG TCGAGACGGC CCGCCGGCTG
ACGGTCTCGC CCGAGACGGT GAAGGCGTAC CTGCGCAGCA TCATGCGCAA GCTCGGTGTC
CGTAACCGGA CGGCCGCGGT ACACGCCGCG CGCCAGATGG GAATGCTGCC CTGA
|
|---|
| Protein sequence | MLMTLTLAIP SRMQTVLPRA LARLRASSGA HITFGGMVAL HSRTLTITNV DGPGPAGLIG
VEIPSGMGIG GQVVKHCRPV VINDRAAARR ALRSTAAEID DTGLGAIMAV PVCEDGAVAA
VLYAAVEPDL SFDESAIHAA MAVARLMERE LGLVSGGPRS RVPSVPVQGR VPVQGRVPVE
GRVPVQGGVP VEGRVPVQGG VPVQGRVPVQ GRVPVQGGVP VEGRVQVPIQ GGVPGAVPFP
RMPGLPRESL RLAYRELQEV TEHVADPFLR GRIGGVSELL RGLLAEETKT VGRLTLTPRE
LEVLAQVSLG LSNVETARRL TVSPETVKAY LRSIMRKLGV RNRTAAVHAA RQMGMLP
|
|---|
| |