| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1388 |
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| Symbol | |
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| ID | 3903369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. CcI3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007777 |
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| Strand | - |
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| Start bp | 1668334 |
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| End bp | 1670238 |
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| Gene Length | 1905 bp |
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| Protein Length | 634 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637878725 |
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| Product | polyprenyl synthetase |
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| Protein accession | YP_480494 |
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| Protein GI | 86740094 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.196896 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00569212 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCGCCGAC GGGGTCAGCT CCACGTCGGC CGCCCCGGGA TCGGCGGTCT CCACCTCCAC
CCCGTACTCG CCGTCGGGCA GCATGACGGT GACCATGCCT GTCTCGCTCT GCGCCCGCAC
GCCGTCCGGC GGTTCGCTGA AGTGCAGGTT GACGTCGCCG TCCCGGCTGC GCGCGGCGAC
CGGACCGCGC GTGAGCTCCC GCCCGGCGAT GGTGCCATCG CGGGTGACCA GGGACAGTTC
ACCGCCTACC CCCCACAGCG TGATTTCGCC GGCGAGCACC TCGGCCCGCA CCCGGACCCG
TGGCGGCACG GTCAGCCTGA CCCGCACGTC GCTGGCCCGG CCGTCGATCC GCAGCGTGCT
CCCGGCCCTC GTGAGCACGG GTACGGACCG ACCGGGACGA CGCCGCACGG TCAGCGCGAC
GTGCACGTCC TCGCGGTCCC GCCCGGAGAT CTCGACGCGG CCGGCGGCCA CCAGAACCTC
CACGGCGTCG ATACCGTCGA CAGTGTGAGT CAGCTCCGCG GGTGGCAGCC GCAACAGGGT
CAATCCGCCC AGTGCGGCGG CGACCAGCAG AACGGCGACC ACGACGACGG CGGTGTCGAA
CACGGGCACA CCGCACGGTA CCCCGGGCGC CGGCCAATCC CCGGCCACAC CACGGTGCCG
GACCACACCA CGGTGCCGGA CCACACCACG GTGCCGGACC ACACCACGGT GCCGGACCAC
ACCACGGTGC CGGACCACAC CACGGTGGAT GTGCGCCGGC GGGTCTCCGC CGTGTTGCGG
CGCTTCGCCG GTTCGCGCGG AGCGCTCCTG CGCGGAATCG ACGACGATCT GATCCCGTTC
GTCCGTATCG CCACCGAATT TCTGCTGGCG GAGGGCAAGC GGTTGCGTCC CGCCTTCTGC
TACTGGGGGT GGCGGGGCGC GGGCGGCCCG GACTGCGACG AGATTGTGAC CGCCGCCGCC
GCCATCGAGC TGCTGCACGC CTGCGCGCTG ATCCACGACG ACGTCATGGA CGCCTCCGAC
ACACGGCGCG GCAGGCCGGC CGCGCACCGG CGCTTCTCCC GGGTCCACCG GACCGCCGGC
TGGCGGGGTG ATCCCGCCGA CTTCGGCCGC TCGGCCGCGA TCCTGCTCGG CGATCTGTTC
CTGGCCTGGG CCGACGAACT GCTCGCGGCC AGCAGGATGC CACCCGAGGC GTTGGTCCGG
GCCTGGCCCA CCTACGGGCG GATGCGCAGC GAGCTGATGG CGGGGCAGTA CCTCGACCTC
GTCGGCCAGG CCGAGGCCGG TCCGCACGGC GGCCTCGATC CCGGGCGGGC GGTCCGCATC
GCCCGGTACA AGACCGCCGG TTACACGGTG GTCCGTCCCC TGCAGCTCGG CGGTCTGCTC
GCGGGCGCGC CGCCGGACCT GTTGGCGGCC TATGCGGCGT TCGGCCTGCC GCTCGGCGAG
GCGTTCCAAC TCCGCGATGA CCTCCTGGGC GTGTTCGGCG ATCCGGCGGT GACGGGAAAA
CCCACCGGGG AGGATCTGCG TGACGGGCGG CCCACTGGCC TGCTGGCGCT CGCGCTGACC
CGTGCGCAGC CGGCCGCGGC GGCCCGGCTG CGCACGCTGA TCTCCCCGCC GGTCCGGCGC
GCCGGGCACC CTGAGGATGC GGGACAGCCC GAGAATCCCG GGTATTCCGG GGGACCCGGA
TGTTCCCCGG GATTCGGGCC CACCGAGAAC CCCGCGGCCC GCGCCGCCCG GGTCGCCGAG
GCCCGCGACA TCATCGCCGC AAGCGGAGCG GTGGCCGCCG CCGAGGAACG GATCGCCGCC
CGGACCGCCA CGGCGGTCGA GGCGGCCCGA CGGGCGGATC TGGACGTCAC AACCCTCGCC
GCCCTGACGG AACTCGCCAT GGCAGCGACT TCGCGATCAC ATTGA
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| Protein sequence | MRRRGQLHVG RPGIGGLHLH PVLAVGQHDG DHACLALRPH AVRRFAEVQV DVAVPAARGD
RTARELPPGD GAIAGDQGQF TAYPPQRDFA GEHLGPHPDP WRHGQPDPHV AGPAVDPQRA
PGPREHGYGP TGTTPHGQRD VHVLAVPPGD LDAAGGHQNL HGVDTVDSVS QLRGWQPQQG
QSAQCGGDQQ NGDHDDGGVE HGHTARYPGR RPIPGHTTVP DHTTVPDHTT VPDHTTVPDH
TTVPDHTTVD VRRRVSAVLR RFAGSRGALL RGIDDDLIPF VRIATEFLLA EGKRLRPAFC
YWGWRGAGGP DCDEIVTAAA AIELLHACAL IHDDVMDASD TRRGRPAAHR RFSRVHRTAG
WRGDPADFGR SAAILLGDLF LAWADELLAA SRMPPEALVR AWPTYGRMRS ELMAGQYLDL
VGQAEAGPHG GLDPGRAVRI ARYKTAGYTV VRPLQLGGLL AGAPPDLLAA YAAFGLPLGE
AFQLRDDLLG VFGDPAVTGK PTGEDLRDGR PTGLLALALT RAQPAAAARL RTLISPPVRR
AGHPEDAGQP ENPGYSGGPG CSPGFGPTEN PAARAARVAE ARDIIAASGA VAAAEERIAA
RTATAVEAAR RADLDVTTLA ALTELAMAAT SRSH
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