| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1338 |
|---|
| Symbol | |
|---|
| ID | 3906551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1605550 |
|---|
| End bp | 1607211 |
|---|
| Gene Length | 1662 bp |
|---|
| Protein Length | 553 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878671 |
|---|
| Product | undecaprenyl-phosphate galactosephosphotransferase |
|---|
| Protein accession | YP_480444 |
|---|
| Protein GI | 86740044 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03022] Undecaprenyl-phosphate galactose phosphotransferase, WbaP
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.508778 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGAGA CGGTGTCCGG CGGCACGCGC GCGACCGCTG GGTCGAACTT CGTTCCGCGC
ACCCGCGGCG GGCAGGGGAT GCCGTTCCCG CCGGACGCGC CGGCGGGAAC GGCCGGCCGG
CCCGCCGGCG CACCGCCGAG CCGCACGGCC ACCGGGCCCG GCGGGCGGCA CAGCGCGGGG
AGGGTGAGCC CGGCCGCCGT CGAGACGGGC GGCTACCGCG CTCAGGTGAC CTGGGAACGG
CGTTACGTCC GGCTGCTTGT CCTGTTCGAC GCGGCCGCCT GCGTGGTGGC AGCGGGGCTC
GCGTATTTCG TGCGATTCGG CGACCTGGTC GACTTCGGCA CCCAGCCGGT GTCCTCCAAG
CCGTACATCC TCATGACGGT TCTGCTGCCG CTCGCCTGGG TGCTGGCGAT GTCCCTGAAC
CGGGCCTACG AGAGCCGGTT CCTCGGTGGC GGGTCGGAGG AGTTCCGGCG GGTGGTCAAC
ACGGCGGCCC GGTTCACCGC GGCGGTGGCC ATCGCCTCGT ACGCGACGAA GGCGGAGATC
GCCCGTAGTT ACGTGCTGAT CGCCTTCCCG GCCGCGACCC TGTTCTCCAT GGTGGGTCGG
GTCGTCGGCC GCGGCCTCCT ACACCGGATG CGCCGGGCGG GCCGCTGCCT GCACCGGGTG
CTCGTGGTCG GGGCCGGGGA GTCGGCTGCC ACCCTGGTCC GGCTGGCCCA GCGGGATCCG
ACGTCGGGTT GGGCGGTCGT CGGTGTCGTG CTCGACCGCT CGCCCGGCCG GCACAGTCAC
GACTCCCCGG AACGCAGTGG GTTCGACCTG CTCGGGGTGC CGATCGTCGG CACCTCGGAA
ACCCTGCACA CGGCCATCCG GGCGACGTAC GCCACCACGG TTGCCATCAG TCCGCAGATG
GACGGCGAGA CGTTGCGCCG GGTGCTGTGG ACGCTGGAGG GCAGCGACGT CGACGTGCTG
GTCTCCTCGG CGCTGACCGA CGTGACCGGG CCGCGGATCT CGATTCGTCC GGTGGCCGGG
CTGCCGCTGC TGCACATCGA GGAGCCGGAG CTCACCGGTA CCCGTCGGGT GATGAAGATG
GTCTTCGACC GGTGCGTGGC CGGAACGATC ATCCTGCTGT TCTCCCCGCT GCTGCTCGGT
CTCGGGCTCG CGGTGCGCCT GACCAGCCGC GGCCCGGCGT TGTTCAAGCA GATCCGGGTG
GGGCGGGGTG GTGAGCACTT CACGATGTAC AAGTTCCGGT CGATGTACGT CGACGCGGAG
GCGCGCAAGG CGGAGCTGGA GTCGCGCAAC GAGCGGGCCG AGGGGCTGCT GTTCAAGATG
CGTGACGACC CGCGGATCAC CAAGGTCGGG AAGTTCCTGC GCAAGTGGTC GCTCGACGAG
CTGCCGCAGT TGTTCAACGT GCTGGGCGGC ACGATGTCGC TGGTGGGGCC GCGTCCGCCG
CTGCCGTCGG AGGTCGCCCG CTACGAGGAC GACGTGCACC GCCGGCTGAT GGTGAAGCCG
GGGCTGACCG GCCTGTGGCA GATCAGCGGC CGGTCGGACC TCGAATGGGA CGAGTCGGTC
CGTCTCGACC TGCGCTACGT CGAGAACTGG TCACTGGCGA TGGACTTCGT CATCCTCTGG
CGCACCGTGT TCGCCGTGCT GCGTCGCGAG GGGGCGTATT AG
|
|---|
| Protein sequence | MTETVSGGTR ATAGSNFVPR TRGGQGMPFP PDAPAGTAGR PAGAPPSRTA TGPGGRHSAG
RVSPAAVETG GYRAQVTWER RYVRLLVLFD AAACVVAAGL AYFVRFGDLV DFGTQPVSSK
PYILMTVLLP LAWVLAMSLN RAYESRFLGG GSEEFRRVVN TAARFTAAVA IASYATKAEI
ARSYVLIAFP AATLFSMVGR VVGRGLLHRM RRAGRCLHRV LVVGAGESAA TLVRLAQRDP
TSGWAVVGVV LDRSPGRHSH DSPERSGFDL LGVPIVGTSE TLHTAIRATY ATTVAISPQM
DGETLRRVLW TLEGSDVDVL VSSALTDVTG PRISIRPVAG LPLLHIEEPE LTGTRRVMKM
VFDRCVAGTI ILLFSPLLLG LGLAVRLTSR GPALFKQIRV GRGGEHFTMY KFRSMYVDAE
ARKAELESRN ERAEGLLFKM RDDPRITKVG KFLRKWSLDE LPQLFNVLGG TMSLVGPRPP
LPSEVARYED DVHRRLMVKP GLTGLWQISG RSDLEWDESV RLDLRYVENW SLAMDFVILW
RTVFAVLRRE GAY
|
|---|
| |