| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_1146 |
|---|
| Symbol | |
|---|
| ID | 3903574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 1360375 |
|---|
| End bp | 1362795 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637878478 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_480254 |
|---|
| Protein GI | 86739854 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1807] 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0503297 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGCC GGCACGAGAT GGGGCAGACG GGGCCTGTCT CCGTCGAACC CGGGACAGAG
CCGCAGGCGC CCTTCGACGT CATCGATGCG CAGGTTGTCG TGAGTCCCGG CTTGGAGAGC
GGCCTTGCGC ACGGGACACC CGGATCGGTG GTCGTCGCCG CGCCCAGGGG TGACGCCGTG
CCCAGGGGTA ACACTGGGCT CGGGGGTAAC ACTGGGCTCG GGGGTGACGC CGAGCCCCGG
AACGACACGC CGCGGTCCCG GCCGGACGGA GAACAACCGC CGGCCGGGCC GCCGGCCTCC
GACGCCGCTC GCGGTCGGCG GACTCCCGTC CAGCGGCTGC GCGTTCGTCT CGCGAGCATC
TCGGGGCCCG CTCGGTACGT GATGGTGCTC GCCGTTCTGA GCGCGGCGGT CGCCGTCGTC
CTCCGGCACA CCGTGTTCCC GTTCCTGTCG GTCAACAACG ACGAGGGCAT CTACCTCCTG
CATGCCAGGA CCCTCGCCGA GGGCCGCCTG TTCCCGCCCG CCCCGGACCC GGCACGGTCC
TACCTGCCGT GGCTGGGAAC CGTTGTCGGC GATCACTACG TGTTGAAGTA CACGCCCTTC
GTACCCGCGA TCTTCGCAAT CGGCATCGTG CTGACGGGAA GCATCGATCC GGCGCTTGCA
ATGATCGTCA TGGCGGCGGT CGTCGTCACC TACCTGCTGG GCGTCGAGCT GTTCGGTAGC
CGGCGGACCG CGGCGTTGGC GGCGACCCTG CTCGCCCTCT CCCCGCTGGT GATCCTGCAG
AGCGCGATGG TGCTGAGCTA CTTGCCGACC CTGGTGCTGC TGCAGGTGAC CGTTCTGGGG
GTGTTGCGGG GACGGCGCCG CCGACGGGCG GCACCGGTGG TCGTCGCGGG CCTCGCCCTC
GGCGTGGCGG CGGCGGTGCG GCCGTATGAC GTCGTCCTGC TCCTGGCTCC GCTCGCGATC
TGGCTGCTCC TGACCTCCAC GGGCGGGCGC TGCTGGCTGG GCCGGTGGCT GCTTTGCGGG
CTCGCCGCGC CCGTGGCGCT TGTCCTGCTC AGCAACGCCG CTGCCACCGG TGACCCGTTG
CGGCTGCCGT TCACGCTCCT TGAACCCGAC GACAAGCTCG GCTTCGGGGT GCGCAAGCTG
TATCCCGGCG ACGGCAGGCA CGACTTCGGC TTGCTCGAAG GGCTGCGGTC GGTCGGCGAC
CACCTGTGGC TGTTCGGCGG CTGGGCCTGC GGGGGAGTGG TGCTGGCCGG CTGCGCGATC
GTCGTGGCGG CTCGGCGGCA GCTGTCCGCA CCCGCCGCGC TCCTGGGTGC GGGTGGGCTG
CTCTTCCTGG GCGGATACGT CGGCTTCTGG GGCGCGTGGA ACGCGGCCGA GTTGTGGGGC
GGCATCCGCT ACGTCGGCCC TTTCTACCTG GTCCCGGTGC TCATCCCGCT CGTCCACCTC
GGCGCGGAGG GCCTGGTCAG GGCCGGCGAA GCCGTCTTCG CCCGCGGGCG AAGACTCGGG
CTCATCGCCG TCGCGGGGAC CGGCGCCGCC ATCCTGGCGC TCACGGCCGT CGTCCTGGTC
GGGGCGGTGC GCGCCAACCT CACGCTCACC GGGCACGACC GTGACCTCAG CGCGATGCTG
GACCGGCTGC CGGGCGATCC GCTCGTGTTC GTCGCGGCGA ACCCGCCGTT TCTCGGGCAT
CCCACTCCGG TGACCGCGAA CGGGCCGAAG CTCGAAGATC CTGTGCTGTT CGCCGTGTCG
CGGGGGGTCG ACGATCTCAT CGTGGCCGCT GACCACGCGG ACCGCCCGGC CTATCTGCTC
CGCCTGGCAT CGGCCTACGA CCGCTCACCC GCCTCGCCCT CCACCGCGCG GGTCGAACGG
CTGGCGGTCA GGAGCGGCAG GCGGGTGGCG GTGACCCTGA GAGTGGATGC CGCGCCCGCG
GGCGCCCGTT CCGCCCGCGT CGTGCTCACC GAGGGTGTCC GCCGCCTGTC GATTCCGGTC
CATCCGCGGA TCCCCACCTC GATGATCCTC ACCGTCGACG CGGACGGCCT CGATACCACC
GATGTCATCA GTATCACCAG TATTGCCAAC ATCGCTGGCG GCATGGACAG CACCGGAATC
GTGACTGACC GCAACGACTC CGGTCGGTCC CGGGTGCATT CCGGATCCCT CGGCCGTCCG
TCGGCAAGCA CCGTGCGGGA CGGTCGGGGC ACCTCCATCA CCGTGGCCTA CTACGCGACG
AGCCCTTCCG GACGGGAACA TTTCCTCGAT CAGCAGGTGT TGCCCGTGCG GCTGGCCGCA
CGGGACGGTT CCCGGCCGGA CGGTTCCCGG CCGGCTGCCG GCCCGCCGGT CACCGTGCTC
GGATCCCTCG GGGAGGTCGA TGAGGTCGGC GAGGGACGTC GGCCGCCGCT GCGCATCATC
ATCGATGATC GTCGAGGCTG A
|
|---|
| Protein sequence | MSSRHEMGQT GPVSVEPGTE PQAPFDVIDA QVVVSPGLES GLAHGTPGSV VVAAPRGDAV
PRGNTGLGGN TGLGGDAEPR NDTPRSRPDG EQPPAGPPAS DAARGRRTPV QRLRVRLASI
SGPARYVMVL AVLSAAVAVV LRHTVFPFLS VNNDEGIYLL HARTLAEGRL FPPAPDPARS
YLPWLGTVVG DHYVLKYTPF VPAIFAIGIV LTGSIDPALA MIVMAAVVVT YLLGVELFGS
RRTAALAATL LALSPLVILQ SAMVLSYLPT LVLLQVTVLG VLRGRRRRRA APVVVAGLAL
GVAAAVRPYD VVLLLAPLAI WLLLTSTGGR CWLGRWLLCG LAAPVALVLL SNAAATGDPL
RLPFTLLEPD DKLGFGVRKL YPGDGRHDFG LLEGLRSVGD HLWLFGGWAC GGVVLAGCAI
VVAARRQLSA PAALLGAGGL LFLGGYVGFW GAWNAAELWG GIRYVGPFYL VPVLIPLVHL
GAEGLVRAGE AVFARGRRLG LIAVAGTGAA ILALTAVVLV GAVRANLTLT GHDRDLSAML
DRLPGDPLVF VAANPPFLGH PTPVTANGPK LEDPVLFAVS RGVDDLIVAA DHADRPAYLL
RLASAYDRSP ASPSTARVER LAVRSGRRVA VTLRVDAAPA GARSARVVLT EGVRRLSIPV
HPRIPTSMIL TVDADGLDTT DVISITSIAN IAGGMDSTGI VTDRNDSGRS RVHSGSLGRP
SASTVRDGRG TSITVAYYAT SPSGREHFLD QQVLPVRLAA RDGSRPDGSR PAAGPPVTVL
GSLGEVDEVG EGRRPPLRII IDDRRG
|
|---|
| |