| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0487 |
|---|
| Symbol | |
|---|
| ID | 3903007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 569467 |
|---|
| End bp | 571290 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637877818 |
|---|
| Product | uroporphyrinogen-III synthase / uroporphyrinogen-III C-methyltransferase |
|---|
| Protein accession | YP_479602 |
|---|
| Protein GI | 86739202 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0007] Uroporphyrinogen-III methylase
[COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.188044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCC GACGAACGAA GAAGCCCGTC TCCCCGGTCG CCCTGGTGGG TGCCGGACCG
CGTGACCCCG GACTGCTCAC CGTCCTCGCG GTCGAGACCC TGGCCGCCGC CGACCTGGTG
GTTGCCGATC CCGAGGTGGC GCCGGCGGTG GTGGAGAACC TCACCGCCGA AGTGCTGCGC
ATCGGCGACC TCGAGGCGCC GAAGCCGGTC CGTGACGCGG AGGCGGCGAC CGCCGCGGTG
GTGAGCAGGG CCCGTGCCGG TGACAAGGTG GTCCGGCTCT ACGCCTCCGA TCCGTGGCTG
ACCCGCATCG GCGCCGCGGA CGCCCAGGCG CTCGCGAAGG CCAAGATCCC CTATCGGGTG
GTGCCCGGCA TCCTCACCGG CGCCGCGGTC GCGACCTACG CCGGGGTCGC CCCGGGCGCG
CCGGTCACCT TCGCCAGTAC CTCCGGGGTC TTCTCGTCGT CGGGCACCGT GCCGGCGTCC
TCGCCGTTCG GCGGGAGCGA GCCGGTGGGT CCGCTCACCG GTCCTCCGTT CGGGGCCTCG
CGGCTGGGCG GACGGCCGAT CGCCGGTCTC GGGGGCGGGC TCGGCGGTGG CCTGGGAACC
GGCGGGTTCG GCTCGCCGCT GGGCCTCGGT GCCGCGGGCG GCTTCGGCGG GTTCGGTGCG
CCGATCTCCT CCCCCGGTGA CCTGGACTGG GGTGCCCTCG CCCAGACCCC GGGCACCCTC
GTGGTCACGG CGGCACCGAC GGAGGTCGGC AAGGTCGCGG CGGCGCTCGT CGAGCACGGG
CGGCCCGGTG ACACCCCGAT CGCGGTGACC GTGGACGGCA CCACCACCGA CCAGCGCACC
GTCACCTCGA CGCTCGACCG GGTCGAGGCG GACACGGCAC CGCTGTTGAC CGCGGCCCCC
ACCCCGATCA CCCAGGTCGT GCTGTCCATC GGCCCGGTGG TCGCGACCCG CGGCAAGCTC
TCCTGGTGGG AGACCCGGGC GCTGTTCGGT TGGACGGTGC TGGTCCCGCG GACCAAGGAA
CAGGCGGCGA TCCTGTCCGA CCTGCTGCGT TCGCACGGCG CAAGCCCGCT GGAGGTGCCG
ACGATCGCCG TCGAGCCCCC GCGGACCGCC GCCCCGATGG AGCGCGCGAT CACCGGTCTG
GTCTCTGGGC GCTACCAGTG GGTGGCCTTC ACCTCGGTCA ACGCGGTCAA GGCGGTGCAG
GAGAAGGTCG AGGAACGCAG CCTCGACGCC CGCGCGTTCG CGGGGGTCAA GGTTGCGGCG
ATCGGCGAGG CGACGGCCGA CGCGCTGCGT ACCTTCGGTA TCCGGCCCGA TCTCGTCCCG
TCCGGGCAGC AGTCCAGCGA GGGGCTGCTG GCGGACTGGC CGGACTTCGA CGACACCCTC
GACCTGCTCG ACCGGGTGCT GCTGCCGCGT GCCGACATCG CCACCGAGAC CCTGGTCGCC
GGCCTGAAGG AACGCGGCTG GCAGGTCGAT GACGTGACGG CCTACCGCAC CGTGCGTGCC
GCTCCGCCGC CCGCATCCAT CCGGGAGGCG CTGAAGGGCG GCCGGGTCGA CGCGGTCGTC
TTCACCTCAT CCTCGACCGT GCGCAACCTG GTCGGCATCG CCGGCAAGCC CCACGAGACG
ACGGTGATCG CCGTGATCGG TCCGGCGACG GCCGCCACTG CCCAGGAGCT CGGGCTGCGC
GTCGACGTGC AGGCTCCGGA GGCGTCCATC CCCGCCCTTG TCGGGGCGCT GGCGGAGTTC
GCTGCCGAAC ACCGGGAGGA GCTCGGGAAG ATCGGGCCGC TCGCTGCGCG GTTGCCGAAG
CCACGGCGAG GCTCGCGGCG GTGA
|
|---|
| Protein sequence | MATRRTKKPV SPVALVGAGP RDPGLLTVLA VETLAAADLV VADPEVAPAV VENLTAEVLR
IGDLEAPKPV RDAEAATAAV VSRARAGDKV VRLYASDPWL TRIGAADAQA LAKAKIPYRV
VPGILTGAAV ATYAGVAPGA PVTFASTSGV FSSSGTVPAS SPFGGSEPVG PLTGPPFGAS
RLGGRPIAGL GGGLGGGLGT GGFGSPLGLG AAGGFGGFGA PISSPGDLDW GALAQTPGTL
VVTAAPTEVG KVAAALVEHG RPGDTPIAVT VDGTTTDQRT VTSTLDRVEA DTAPLLTAAP
TPITQVVLSI GPVVATRGKL SWWETRALFG WTVLVPRTKE QAAILSDLLR SHGASPLEVP
TIAVEPPRTA APMERAITGL VSGRYQWVAF TSVNAVKAVQ EKVEERSLDA RAFAGVKVAA
IGEATADALR TFGIRPDLVP SGQQSSEGLL ADWPDFDDTL DLLDRVLLPR ADIATETLVA
GLKERGWQVD DVTAYRTVRA APPPASIREA LKGGRVDAVV FTSSSTVRNL VGIAGKPHET
TVIAVIGPAT AATAQELGLR VDVQAPEASI PALVGALAEF AAEHREELGK IGPLAARLPK
PRRGSRR
|
|---|
| |