| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0223 |
|---|
| Symbol | |
|---|
| ID | 3905390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | + |
|---|
| Start bp | 262847 |
|---|
| End bp | 263977 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637877552 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_479341 |
|---|
| Protein GI | 86738941 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.258256 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCATGTCC CTGCGGCGCG TATCGTCTTC TCACCGGAGG ATCGCGCGGA GATCGCATCG
GCCGCGACCG AGATCCTGGC CACCGGTGCG CTGACCTTGG GCGTCCATAC CGCTGAATTC
GAGGCGGCAT TCGCCGCGGC TCACGAGGCC CCGTTCGCGG TCGCCGTGAG CAGTGGAACA
GCCGCATTGG AGATCATCCT TCGCAGTCAC GGTGTCGAAG GCGCGGATGT CGTCGTGCCG
ACGAACACGT TTGCGGCGAC CGCTTTCGCG GTGCTGCGGG CCGGTGCCAT GCCGGTTTTC
GCGGATGTGA GTTCGGACAC CTTTGCCCTG ACCGCCCGCA GTGTCGAGGC CGCGGTGACG
CCGCGGACCC GCGCCGTTGT CCTGGTCCAT ATCGGTGGGC TGATCCCGCC GGACGTGGCC
GAGTTGCGGG CCTTCTGTGA CGATCGAGGC ATCGCGCTGG TCGAGGACGC GGCACATGCC
CACGGCAGCC GCCACGGCGA CGGCCACGCT GGGTCGTTCG GGATCGCGGG AGCGTTCTCG
TTCTATCCAA CCAAGGTCAT CACGAGCGGT GAGGGCGGAA TGATCCTCAC GTCCGATCCC
GCCATTCACG AAGCCGCTCG GATCTATCGT GACCAGGGCA AAGCCGGTTT TCTCGGGAAC
GTCCATATCA AGCAGGGGTA CGCCTGGCGG CTCAGCGAGA TTCATGCGGT CACCGGCCGG
GTGCATCTGC GGCATCTCGC TGACTTCCTG GCGACCCGCG CCGCCGTAGC CGCGCGGTAC
GACGCCGCGC TGGACACCCT GGGTACCGTC ACCCGCCTGC AGGTGCCGCC GGATGGTCTC
TGCAACTACT ACAAGTACAT CGTCCTGCCC CGCCCCGGAA TCGACCGCGG CCGGCTGAAG
AAGGAGCTGA AGGAACGCCA CGGCGTCTCC CTGAGCGGTG AGGTTTACGA GTCGCCGCTG
CACCGGCAGC CGGTCTTCGG CGACTATGCG CTCCGGTCCC TTCCGGTCGC CGAGGACATC
TGCGCCCGGC ACGTGTGCCT GCCCATCCAT TCGGACATGA CCGAGGCGGA GGCCGACCAT
GTGGTCGCGT CCTTCGCCGC CGCGCTGCAG AGCCTGAGCC TGGACGGATG A
|
|---|
| Protein sequence | MHVPAARIVF SPEDRAEIAS AATEILATGA LTLGVHTAEF EAAFAAAHEA PFAVAVSSGT
AALEIILRSH GVEGADVVVP TNTFAATAFA VLRAGAMPVF ADVSSDTFAL TARSVEAAVT
PRTRAVVLVH IGGLIPPDVA ELRAFCDDRG IALVEDAAHA HGSRHGDGHA GSFGIAGAFS
FYPTKVITSG EGGMILTSDP AIHEAARIYR DQGKAGFLGN VHIKQGYAWR LSEIHAVTGR
VHLRHLADFL ATRAAVAARY DAALDTLGTV TRLQVPPDGL CNYYKYIVLP RPGIDRGRLK
KELKERHGVS LSGEVYESPL HRQPVFGDYA LRSLPVAEDI CARHVCLPIH SDMTEAEADH
VVASFAAALQ SLSLDG
|
|---|
| |