| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0108 |
|---|
| Symbol | |
|---|
| ID | 3902942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 130057 |
|---|
| End bp | 131040 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637877439 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_479231 |
|---|
| Protein GI | 86738831 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.582013 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGATT ACCAGCGGGA CGGCCGGAGG CCGACGTACG AGGGGCGTCC CCTGCCCCGG
CCCGAGGAGG AGGCCGTCGA CCAGGGACTG GGCTTCGACC TCGGCACGCT GCTGAGCCGG
CGGCGGATGC TGACCTTTCT CGGCCTCGGT GCCGCGACGG CGGGCCTGAC TGCCTGCGGA
ACAGGCGGGG CCGAAGCCTC GGGATCGTCC GGCTCCACCG CGTCGCCCAG CACGTCGTCA
TCCGCCTCGA CCAGCGGGGC GTCCGGGGAG ATCCCCCAGG AGACGGCTGG CCCCTACCCG
GGCGACGGTT CCAACGGGCC GGACGTGCTC GAGCAGAGCG GCGTGGTCCG CAGCGACATC
CGGTCCAGCT TCGGCGGAGC GACCGGCACC GCCGAGGGCG TTCCCATGAC GCTGGAGCTG
ACCATCACCG ATCTCGCCGA CGGCGTCCCC TTCGCGGGAG TGGCCGTCTA CGTGTGGCAC
TGTGACCGCG AAGGCCGCTA CTCGATGTAC ACCAACGGCA TCACCGACCA GAACTACCTG
CGCGGCGTCC AGATCGCCGA CAAGGCCGGG AAGGTACGCT TCACCAGCAT CTTCCCGGCC
TGCTACAGCG GACGCTGGCC ACACATCCAC TTCGAGGTCT ACCCCGACCA GGCCAGCATC
ACCGACGCCA CCAAAGCGAT CGCCACGTCC CAGGTCGCCC TGCCGAAGAA CGTCTGCGAC
CAAGTCTACG CGCAGCAGGG CTACAAGGCG TCGATCGCGA ACCTGTCTCA GGCCAGTCTC
GACAGCGACA ACGTCTTCGG GGACGACGGT GGCGCCCGCC AGCTCGCCAC CGTGACCGGC
AACGTCACCA GCGGCTACAC GGTCTCCCTC GCCGTCGGCG TCGACACCAC GACCACCCCG
TCCAGCGGCC AGCCCGCCGG TGCGCCCGGC GGCCAGCCAC CGTCCGGCGG GCCCGGCGGG
CGGCCGCCGG GTGCGCCGAG CTGA
|
|---|
| Protein sequence | MTDYQRDGRR PTYEGRPLPR PEEEAVDQGL GFDLGTLLSR RRMLTFLGLG AATAGLTACG
TGGAEASGSS GSTASPSTSS SASTSGASGE IPQETAGPYP GDGSNGPDVL EQSGVVRSDI
RSSFGGATGT AEGVPMTLEL TITDLADGVP FAGVAVYVWH CDREGRYSMY TNGITDQNYL
RGVQIADKAG KVRFTSIFPA CYSGRWPHIH FEVYPDQASI TDATKAIATS QVALPKNVCD
QVYAQQGYKA SIANLSQASL DSDNVFGDDG GARQLATVTG NVTSGYTVSL AVGVDTTTTP
SSGQPAGAPG GQPPSGGPGG RPPGAPS
|
|---|
| |