| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1666 |
|---|
| Symbol | |
|---|
| ID | 5452397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 1814738 |
|---|
| End bp | 1815817 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 640875435 |
|---|
| Product | periplasmic sugar-binding protein |
|---|
| Protein accession | YP_001411158 |
|---|
| Protein GI | 154250333 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.899357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT TTTGGCTATT AGGTATTCTT TCAGTATTGT TACTTTCTGC GGTTTTAAAC
TTTGCAGTTG ATGTTGGTAT AGTTCTTCCA ACTAACGTCG AACCAAGATG GATTCAAGAC
GAAACAAGGT TTAAAGAACT TTTGAAAAAC ACGAAGTACT CTGTTGAAAT TTTATTCAGC
CAAGGTTCAC CAGCTAAGGA AAGAGAAAAC GTTGAAGCCT TACTTTCAAA AGGTGCGAAA
GTTATAATTA TTTGTCCACA CGACGCGGTT GCGGCAGCAG CAACGGCAGA ACTTGCAAAG
AAATCAGGAG CCTACGTTAT TTCTTATGAC AGACTTATCA TGAACACATC AGCAGTCGAT
TACTATGTAA CATTTGATAG TGTTGAAGTT GGTAGAGCAA TGGGTAGATT CCTTGTTCAA
AATGTAAAAT CAGGGACAAA GAATAATCCA TTGTATCTCT ACGCAGGGGC ACTTTCGGAT
AACAATTCAT TCTTATTCTT CCAGGGCGCT TGGGAAATTC TCCAACCAGA AATTGCAAAG
GGTACTTTTA GAATTATAAA CTCCAGTGAA GCAGAAAAGG TTAAAAATAA GAAAGATTTA
ACGAGAGATG AAATGGCAAG AATTATAGGT CAAGTTACAA CAAACTGGGA CTTTAACGTT
GCGAAGAAGA AAGCTGAGGA TGATCTTACA AGAGCAAAAG CAACGGATAA AGGAACAGTC
TACATTCTTG CACCAAATGA TGGTACAGCA AGGGCTATAG CCGATGCCTT CAGAACAGAT
AAAGATGTTA AGGCATATTA CATCACGGGT CAAGACGCAG AAAAAGCATC AGTACAATAC
ATAATCGATG GAAAACAATC GATGACAGTA TTCAAAGATA CAAGAGTACT TGCTGGCGAC
GCAATAAAAG TTGCTCAACT TCTCTTAGAA GGTAAGAAAC CAACAACAAC GGCAACATAT
GACAACGGAA AAATTAAAGT ACCAGCAATC CAATCAGAAA TTCAAGTTGT TACAAAGGAC
AACGTTAAGA AAATACTTAT CGATTCAGGG TACTACAAAT CTTCAGATTT CAAATGGTAA
|
|---|
| Protein sequence | MKKFWLLGIL SVLLLSAVLN FAVDVGIVLP TNVEPRWIQD ETRFKELLKN TKYSVEILFS
QGSPAKEREN VEALLSKGAK VIIICPHDAV AAAATAELAK KSGAYVISYD RLIMNTSAVD
YYVTFDSVEV GRAMGRFLVQ NVKSGTKNNP LYLYAGALSD NNSFLFFQGA WEILQPEIAK
GTFRIINSSE AEKVKNKKDL TRDEMARIIG QVTTNWDFNV AKKKAEDDLT RAKATDKGTV
YILAPNDGTA RAIADAFRTD KDVKAYYITG QDAEKASVQY IIDGKQSMTV FKDTRVLAGD
AIKVAQLLLE GKKPTTTATY DNGKIKVPAI QSEIQVVTKD NVKKILIDSG YYKSSDFKW
|
|---|
| |