| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_1190 |
|---|
| Symbol | |
|---|
| ID | 5452215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | - |
|---|
| Start bp | 1285809 |
|---|
| End bp | 1286390 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 640874966 |
|---|
| Product | protein of unknown function DUF340 membrane |
|---|
| Protein accession | YP_001410694 |
|---|
| Protein GI | 154249869 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2431] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000000149231 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCTT TATTCCTAAT TTTATCAGTT ATATCAGGTC TTTTTATAGG AAGACTAACT
CATTTTGAAT TACATGGTAA AGCGGTTGAA ATAATTCTTT ATGCGCTTGT TTTTTTAGTT
GGTCTTGATT TAAGTAAAGA AAAAATAGAG AAGAGATTTT TAAAAGGTAT ACTCATGACA
ATAATTTCGA CAATAGTGGG GACTCTAATA TTCGCATTTA TACTTTCGCT ATTTTTACCA
CTGAAAAAGC TTGAAACACT TCTTGCGGCA TCTGGCTTTG GTTGGTATAG CTTATCAGCG
GTTATAATTA CCAGTACATA CAGTGCGTAT ATTGGGAGCA TTTCTTTCTT TGCGAATGTA
CTTAGGGAAT TGATAGCTAT AATCATTTCG CCGTTTGCTT TGAAAAAAAG CAGATATGGT
ACTATATCCG TTGCTGGTGC TACATCAATG GATACCTTAT TAGGAATTAT TTCTATGTAT
AGCGATAGAG AAACAGCACT TATTTCGTTT GGCCATGGGT TTGTAGTTTC AATTTTAGTA
CCCGTATTCG TTAATCTTTT TCTGAAACTT TTAGGTGTGT AA
|
|---|
| Protein sequence | MSALFLILSV ISGLFIGRLT HFELHGKAVE IILYALVFLV GLDLSKEKIE KRFLKGILMT
IISTIVGTLI FAFILSLFLP LKKLETLLAA SGFGWYSLSA VIITSTYSAY IGSISFFANV
LRELIAIIIS PFALKKSRYG TISVAGATSM DTLLGIISMY SDRETALISF GHGFVVSILV
PVFVNLFLKL LGV
|
|---|
| |