Gene Fnod_1083 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFnod_1083 
Symbol 
ID5451589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFervidobacterium nodosum Rt17-B1 
KingdomBacteria 
Replicon accessionNC_009718 
Strand
Start bp1183816 
End bp1186002 
Gene Length2187 bp 
Protein Length728 aa 
Translation table11 
GC content36% 
IMG OID640874851 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001410588 
Protein GI154249763 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAAA GTGAAAGTGA AAAGAAAGAG CTCACTATGG TTAAAGATAA TAACAACGAT 
GAAATGACCA AGAATTTCAT AAATGAAATC GAAAAGTTAC TTGAGAAAAA AATTACAAAC
GAAGACGAAC AAAAAATAGC TCAAGCAATC GAACTTGCTA AGATAGCTTA CGAGGGATTG
TACAGAAAAT CCGGCGAGCC GTTTATTTCG CATCCTTTGG AAGTGGCAAA AATTGTTGCT
TCGTTGAAGC TTGATATTGA AAGTATTATA GCCGCCATCT TACACGATGC TATAGAAGAT
AGTAATGGGA AAGTAACTTA TGAGATGATA GAGAAACAAT TTGGGCACGA TATAGCACTC
ATCGTTGATG GTGTAACAAA GGTAAGTAGA ATAAACGCGC CCGTTGGAAA TATAGAACAG
AGAAAAAAAT TGGAAACGAT TCAAAAGATG CTTTTTGCAA TGGCAGAAGA CATACGTGTC
ATATTTGTAA AATTAGCCGA TAGGTTACAC AATATGAGAA CTATAGATTT CGTTGAGGAT
GTTGAAAAGA AAAAGTACAA AGCACTTGAA ACTTTGGAAG TATACGCACC TATCGCACAT
AAGCTTGGAA TTAACGTTAT AAAATCTGAA CTTGAGGACC TTAGTTTTAA AGTTCTTCAT
TACGATGAGT ACCAAAAAAT CAAGCAGATG ATCGCACAAA AGAAGGTTGA AAGGGAAGAA
CGCCTAAAAA TATACATCCA ACAATTGGAA ACAGCTCTTC AAGAACATAA TATCAAAGCG
AAAGTCGAAG GTCGATACAA GCATTACTAC AGTATATGGA AAAAGATGAT TCAAAAAGGC
AAAGATTTTA ACGAATTGTA CGATTTAATG GGTTTAAGAG CGATAGTAAA TGATGTAACA
AGCTGTTATA CTACGATAGG CATTGTACAC AACCTATGGG TACCATTGCC AGGAAGGTTC
AAAGATTACA TCGCCGCGCC AAAATCAAAT GGATACAGGT CCATCCACAC AACTGTTATT
ACGCAATTTG GCGAACCACT TGAAGTGCAA ATTAGAGATT ATCAAATGCA CGAAGAAGCT
GAGTATGGTT TGATAGCTCA CTGGGCATAT AAAGAAGGGG AACCAACTGT AGATATAAAA
CAAAAGTGGA TTTTAAGGTT AGCCGAATGG AGGAAAGAAC TTTCGCAAGG CTATGCGAGT
CTTGATGATT TGAAAAAAGA ACTACAAATG TCTGAAGTTT TTGTTCTGAC ACCAAAGGGT
GAGATAATTC ACCTTCCATA CGGCGCGACA CCAATCGATT TTGCTTACGC GGTACATACA
GAAATTGGGC ATCACTTTGC TGGTGCAAAG GTCAATGGAA AAATTGTACC AATAGATTAT
CAATTGAATA ACGGTGACGT TGTAGAAATC ATAGTAAATA AATCTTCACC TGGACCTAGC
CTTGATTGGC TAAGATACGC CAAAAGTCCA AGAACAAAGG CAAAGATAAA GAGATTTTTT
AAAGAGAAAG AAAAAGAACA ACTGATAGAA AGAGGTAAAG ACGTACTTAG GCGAATCGCA
AAGAAATTAA ATATTTCAAT TGAAGAATTA TTGGAAAAAC CAGAGATAAA AAAGTACCAA
ACAGCTCACC AAATAGATGA AGAAGAATTT ATCATCAGAC TCGGTGATAA AACGTTAACA
CAAGATGATT TGCTTTCAAT TCTTGGAATC AAAGAACAAC AAAAGAAGAA AACTCAAACT
AAGAAAAAGA AATCTACCGG TTCTTTAGTT ATCGTCGATG GGCTTGAGGG TCTCGAAATT
TTGTTTGCTA AATGCTGCAA TCCTATCCCT GGTGACAAAA TAGTTGGTGT TGCAAGTAAA
AGAGGATTGG TTATACATAG GTCTAATTGT GCTAACGTAG TAAACTTGGG AAATGACAGA
AAGTTTTTGG CAGTTTGGAG AGCGGATATC AACGCTCAAT TCAATGTTCT TGTTAAAATA
GAATTAGATA GAAAAGAACG TGTACCTGAT CTTTTGTCCA AAGCCATGAA AAAGAAAGTT
GAAATAAGGA ACTTTAAATT CGAAATAATT TCCGACGATT ACGTTATTAT ATCTCTAAAC
GTCAACGTCC AATCCCTTGA AGAGCTCGAA GAAATAATGA AATTTTTCAA GTCATTCCCT
GGAATTAGAA AGGTGGTGCG TTCTTAA
 
Protein sequence
MSESESEKKE LTMVKDNNND EMTKNFINEI EKLLEKKITN EDEQKIAQAI ELAKIAYEGL 
YRKSGEPFIS HPLEVAKIVA SLKLDIESII AAILHDAIED SNGKVTYEMI EKQFGHDIAL
IVDGVTKVSR INAPVGNIEQ RKKLETIQKM LFAMAEDIRV IFVKLADRLH NMRTIDFVED
VEKKKYKALE TLEVYAPIAH KLGINVIKSE LEDLSFKVLH YDEYQKIKQM IAQKKVEREE
RLKIYIQQLE TALQEHNIKA KVEGRYKHYY SIWKKMIQKG KDFNELYDLM GLRAIVNDVT
SCYTTIGIVH NLWVPLPGRF KDYIAAPKSN GYRSIHTTVI TQFGEPLEVQ IRDYQMHEEA
EYGLIAHWAY KEGEPTVDIK QKWILRLAEW RKELSQGYAS LDDLKKELQM SEVFVLTPKG
EIIHLPYGAT PIDFAYAVHT EIGHHFAGAK VNGKIVPIDY QLNNGDVVEI IVNKSSPGPS
LDWLRYAKSP RTKAKIKRFF KEKEKEQLIE RGKDVLRRIA KKLNISIEEL LEKPEIKKYQ
TAHQIDEEEF IIRLGDKTLT QDDLLSILGI KEQQKKKTQT KKKKSTGSLV IVDGLEGLEI
LFAKCCNPIP GDKIVGVASK RGLVIHRSNC ANVVNLGNDR KFLAVWRADI NAQFNVLVKI
ELDRKERVPD LLSKAMKKKV EIRNFKFEII SDDYVIISLN VNVQSLEELE EIMKFFKSFP
GIRKVVRS