| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0472 |
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| Symbol | |
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| ID | 5452803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | + |
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| Start bp | 506992 |
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| End bp | 509544 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 29% |
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| IMG OID | 640874222 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001409994 |
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| Protein GI | 154249169 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.361948 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACAATT ACATTGTTTT TTCCATTTAT TTCTCGGTAA TTATATCCAT TGTTAACTTT
ATTTATTCTT TAAATAAAAA GATTAGTAAT TCATGCAAAG CAATACCAAT ATTGAATTTA
TCATTGGTTC TTTTCTCTAT TTTGGAACTG TTAAAATTAG AAAATAATTC ATCAATTTTT
GGAATATTCC AGAACGGAAT ATTGGCTTTC TTACCAGTCT TATTCACGAC TTTCATTTTG
AAGTTCCATT CAGAAATTAT TCCTAGAAAG ATTATTTTGT CTTACTCTAT ACCTATTATA
TACATTATTC TAAAATTTAC AAAAGTATTC AAAAATATAC CATATAATTA TTATCTTTTT
GCCTCTCTTT TGATTATATA TATAACATTT TTCCCAACAA AAAAATCCAT GGATTATATT
AGAATAAGAT ATCTTAACAG CAATATTATA ACAATTTTCT TCGCAAGTAT CTTTTTCTAC
GTGTTTATAT TCATATTTTA TAAAAATCAT CCAGTTCTTT CTATTAGCCT CTCATTTGTA
ATGATTGTTA TTCAATCAAT AATTATAAAT CGTAAGTTAA CGGATCACCC AATTGATAAT
TTGATTAAAA GTATTGAACA AGCAAATACA ATTTTTGTCT TATTAGATGA AGACGACAAC
GTATTGTACA TTAACGAAGC TGGGTTAAAA TTCATAGGAT TAAGTAGAGA CGAAATAATC
GGTAAAAAAA ACGAAGAAAT TATTAAAATA ACAAAAACAA GCAATCATTT AATAGAAAAA
AATGGAAAAA CTTATCGTTT TTCATTGCAA GAGACAAATG CAGGTAAGGT ACTTATAATA
AACGATATAA CAAGTGGTAA TAAATCTTTC TCTTCAATTG ATATATTGAG CAATCTATTT
GATTCACTTT TCGACAATGT ACCAGATGGG GTAGTGATAA TAAAAGAAGA TGGCACGATA
CTAAAGTGTA ACAGACAATT TTTAGAAATG TTTGGATACT CCAAAGACGA AGTTATAGGA
GAAATAATAG ATAATCTAAT AGTACCTGAG GATTTAAGCA ATGAACCAAA ATTACTGAGA
GAACTCGTTA AAAATCAAAA AACACTTAGA GTTGAAACTA TAAGAAAAAG AAAAGATGGA
AAAAAGATAG AAGTAAGATT GACTGTTGCA AAAATAAAAA ATAATAATAC TAATAACAAC
GATAAAGCCG AAGATTTAAT TTACGCTTTC TATACAGATA TAACTTCAGA AAAGGAAGCA
TTAAACATTG TACGAAACAC TCTCCAAAAA GACATGTTAA CAGGTTTGTA CACAAGGTCA
TATTTTCTGA GAAGACTTAC AAGCTTAAGC GAATTCTCGT TAATAGGTGA TCATCATGGA
ATAATACTTA TAGATATAGA CAATTTCAGC CAGATTAACA TATTAAAAAA TCACGCATTC
GGTGATGAAA TATTGAGACA AGTGGCATTA AGGATTAAAA ATTCCCTAAG AGAGGGAGAC
ATAATCTCAC GACCTTATGC GGATGAATTT TGGATAATCA TTGAAAAAGC AGGAAAGAAT
TACCAACAAG CAAGAGAAGT TATAAACAAC ATAGTTTCAA AAATATTCAA TGAAATTTCT
AAACCATACT ATATCGACGG AGAAGTAATA GAACTCAAAT TTTCATCTGG ATTGCACGTA
TTTTCTATTA TTGATAATGC CGATGAGGTT ATGAGAAAAG CAAATCTTGC ATTAAAACGT
GCTAAATCTT CCAAAGATAA AATTATATTC TACAATATCC TAATAGACAA TGAACTTCAA
GAAAAATCAA CAAAAGAACG CGATTTAAGA GAGGCTTTCC ACAATCGTGA ACTGAAAATT
TTTCTACAAC CAATTTGTAA ATACGATAAA ACCATCGTAG GAGCTGAAGC ACTCCTTAGA
TGGGTTAAAA AAGATGGAAG TGTACTACCA CCTATAGAAT TTATCCAACT GCTTGAAGAA
AACGGCATGA TAGTTTCTGT TGGCGAAGAA ATATTAAGAC AGGTCTGCGA AGTTCTCTCG
GAAAACAACG AACTTAAGTT TATAGATATA AATGTTAGCC CAGTACAGTT AAGAGATGAA
AAAATGGCTG AAAGATTCTT TAATATAGTA AGTTCATATG AAATTGACCC GTCAAAAATC
GTCATCGAAA TAACAGAAAA TATACTCATA GATATGAACG ATATAGTAAA GAATAATATA
GATAAACTTC TAAAGTATGG CTTTGAACTA TGTATCGATG ACTTTGGTAC CGGTTATTCT
TCATTGGCAT ATTTAACACT CTTACCACTT AAAAAGATAA AAATAGACAA GTCTTTCGTT
TTTAGACTTC CAGATGATAG AAAATCTATT AAACTTCTAG AAGCTATATA CAATATAGCT
AAGGCTTTCC AACTAGAGGC CATACCGGAA GGTGTCGAGA ACGAAAAACA ACTCGAGATT
CTTTCAATGA TTGGATACAA ATTATTCCAA GGATTTTTCT TTGGTAAACC TGTTCCAACC
TATGAATTTT TGAAAAGATT AACAAAAGAG TAA
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| Protein sequence | MNNYIVFSIY FSVIISIVNF IYSLNKKISN SCKAIPILNL SLVLFSILEL LKLENNSSIF
GIFQNGILAF LPVLFTTFIL KFHSEIIPRK IILSYSIPII YIILKFTKVF KNIPYNYYLF
ASLLIIYITF FPTKKSMDYI RIRYLNSNII TIFFASIFFY VFIFIFYKNH PVLSISLSFV
MIVIQSIIIN RKLTDHPIDN LIKSIEQANT IFVLLDEDDN VLYINEAGLK FIGLSRDEII
GKKNEEIIKI TKTSNHLIEK NGKTYRFSLQ ETNAGKVLII NDITSGNKSF SSIDILSNLF
DSLFDNVPDG VVIIKEDGTI LKCNRQFLEM FGYSKDEVIG EIIDNLIVPE DLSNEPKLLR
ELVKNQKTLR VETIRKRKDG KKIEVRLTVA KIKNNNTNNN DKAEDLIYAF YTDITSEKEA
LNIVRNTLQK DMLTGLYTRS YFLRRLTSLS EFSLIGDHHG IILIDIDNFS QINILKNHAF
GDEILRQVAL RIKNSLREGD IISRPYADEF WIIIEKAGKN YQQAREVINN IVSKIFNEIS
KPYYIDGEVI ELKFSSGLHV FSIIDNADEV MRKANLALKR AKSSKDKIIF YNILIDNELQ
EKSTKERDLR EAFHNRELKI FLQPICKYDK TIVGAEALLR WVKKDGSVLP PIEFIQLLEE
NGMIVSVGEE ILRQVCEVLS ENNELKFIDI NVSPVQLRDE KMAERFFNIV SSYEIDPSKI
VIEITENILI DMNDIVKNNI DKLLKYGFEL CIDDFGTGYS SLAYLTLLPL KKIKIDKSFV
FRLPDDRKSI KLLEAIYNIA KAFQLEAIPE GVENEKQLEI LSMIGYKLFQ GFFFGKPVPT
YEFLKRLTKE
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