Gene Fjoh_3325 details

Gene Information

• Locus tag: Fjoh_3325
• Symbol: sdhA
• ID: 5092932
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: +
• Start bp: 3973623
• End bp: 3975533
• Gene Length: 1911 bp
• Protein Length: 636 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644742752
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_001195660
• Protein GI: 146301069
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
• TIGRFAM ID: [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGGAGT CAAAAATACC CGAAGGCCCG CTTGCCGAAA AATGGAATAC TTATAAAGCA 
AAAGCTAAAC TCGTAAATCC GGCCAACCGA AAAAAATTAA ACATAATTGT TGTTGGCACC 
GGACTTGCGG GAGCTTCCTG CGCAGCCTCT TTGGCCGAAC AGGGTTACAA TATAAAATCA 
TTCTATTTTC AGGATTCAGC CAGAAGAGCC CATTCTGTTG CCGCTCAAGG CGGTGTTAAT 
GCTGCCAAAA ATTACAAAAA CGATGGTGAC AGTGTTTTCA GAATGTTTTA TGATACCATA 
AAAGGCGGCG ATTTCAGGTC CCGCGAAGCT AATGTGTACC GCTTAGCCGA ATGTTCTGCT 
GCCTTAATAG ATCATGCTGT GGCACAAGGC GTTCCCTTTG CCAGAGAATA TGCCGGATAT 
TTAAACAATC GTTCCTTTGG CGGTGTTCAG GTTTCCAGAA CTTTTTATGC ACGCGGACAG 
ACTGGACAAC AGCTTTTATT AGGTGCTTAT CAGGCTTTGA TGAGACAGGT TTCATTAGAA 
AAAGTAAGCC TGCATACCCG TCATGAAATG CTTGATTTAG TTGTAATTGA CGGAAAAGCA 
AAAGGAATTA TTGCGCGAAA TCTTGAAACC GGAGAACTCG AACGCCACGC TGCAGATGCT 
GTTGTCTTAG CATCCGGAGG CTACGGAAAA GTATATTATC TCTCTACATT AGCAATGGGC 
TGTAACAGTT CTGCTATTTG GAGAGCTCAT AAAAAAGGTG CCTACATGGC TGGTGTAAGC 
TGGATTCAGT TTCACCCTAC TTCACTGCCC CAGCACGGAA CCAATCAATC GAAACTTACT 
TTAATGTCAG AATCGCTTCG TAATGACGGA CGTATCTGGG TTCCCAAAAC AGCTGCAGAT 
GACCGGCTTC CAAATTCAAT TCCCGAAGAA GAACGCGATT ATTATCTGGA ACGACGTTAT 
CCTTCTTTTG GCAATCTTGC TCCCAGAGAT ATTTCATCGC GTGCCGCAAA AGAAAGAATC 
GATGCCGGAC ATGGTGTCGG CCCAATGAAA AATGCTATTT ATCTGGATTT CTCCGATGCT 
ATAAAAGCGC AGGGAAAAGA TAAAATAGAA GCCAAATACG GTAATCTTTT TGCGATGTAC 
GAAAAGATTA CCGGAATCAA CGCTTACAAA GAACCCATGC TCATTTCTCC TTCGGCTCAT 
TTTACTATGG GCGGACTTTG GGTTGATTAT GAATTAATGA CCACAATTCC AGGTTTATTT 
GCTCTTGGAG AAGCTAATTT TTCAGATCAT GGTGCCAATC GGCTTGGTGC CAATTCATTA 
CTTCAAGCCT GTGTAGACGG TTATTTTATT GCTCCTTATA CCATTCCAAA TTATTTAGCC 
GGAGAATTAA ATACTCCTAA AGCTGCTATT ACACATCCCG CTTTTGATGA AGCGGAAAAC 
GCTGTCAGAA AACAATTGGA TAAATTTCTA AACAGCAAAG GAACACTTAG TGCTGATTAT 
TTTCATAAAA CTATCGGCAG GCTTTTGTAT GAAAAATGCG GTTTATCCAG AAGCCGAAAA 
AGCCTCGAAG AAGCAATTGA AGGGATTAAA ATCTTAAAAA CTTCTTTTGA GAATGAGCTT 
TTAATTACCG GAGATGATAC TTTAAACAGC GAATTAGAAA AAGCAGGACG AATAGCCGAT 
TATCTCGAAT TAGCCGAATT AATGTGCTAC GATGCCCTGC AGAGAGAAGA ATCCTGCGGT 
GCGCATTTTA GAGAAGAATA CCAAACCGCC GATGGTGAAG CGGTTCGGAA TGACGCTGAG 
TTCTGCTACG TTTCGGCCTG GGAATGGCAG GGAAAAGATA AGCCTCAAAA ATTACATAAA 
GAACCTCTTG TGTTTGAAGC TGTTGAACTT ACTGTTAGAA GCTATAAATA A 

 

Protein sequence

MMESKIPEGP LAEKWNTYKA KAKLVNPANR KKLNIIVVGT GLAGASCAAS LAEQGYNIKS 
FYFQDSARRA HSVAAQGGVN AAKNYKNDGD SVFRMFYDTI KGGDFRSREA NVYRLAECSA 
ALIDHAVAQG VPFAREYAGY LNNRSFGGVQ VSRTFYARGQ TGQQLLLGAY QALMRQVSLE 
KVSLHTRHEM LDLVVIDGKA KGIIARNLET GELERHAADA VVLASGGYGK VYYLSTLAMG 
CNSSAIWRAH KKGAYMAGVS WIQFHPTSLP QHGTNQSKLT LMSESLRNDG RIWVPKTAAD 
DRLPNSIPEE ERDYYLERRY PSFGNLAPRD ISSRAAKERI DAGHGVGPMK NAIYLDFSDA 
IKAQGKDKIE AKYGNLFAMY EKITGINAYK EPMLISPSAH FTMGGLWVDY ELMTTIPGLF 
ALGEANFSDH GANRLGANSL LQACVDGYFI APYTIPNYLA GELNTPKAAI THPAFDEAEN 
AVRKQLDKFL NSKGTLSADY FHKTIGRLLY EKCGLSRSRK SLEEAIEGIK ILKTSFENEL 
LITGDDTLNS ELEKAGRIAD YLELAELMCY DALQREESCG AHFREEYQTA DGEAVRNDAE 
FCYVSAWEWQ GKDKPQKLHK EPLVFEAVEL TVRSYK