| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3320 |
|---|
| Symbol | |
|---|
| ID | 5093038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 3965347 |
|---|
| End bp | 3967770 |
|---|
| Gene Length | 2424 bp |
|---|
| Protein Length | 807 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644742747 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001195655 |
|---|
| Protein GI | 146301064 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGT CTATTATTAA GAAAATCTGC TTTTTTATAG TTCTTTTAAC ATCATTTACT
ATGATGAGCC AGGAATTAGG AAAAGTGAGC GGAAAAGTTG CTTTAAGCGG AAATGAACCC
TTAGAAGGTA TTTCGGTAGT TCTTAAAGGA ACCAAACATT CGTCTGTTAC CAATGCAAAC
GGTCAATATG AAATTAGAAA TGTAAAACCA GGTTCTTACA CAATTAGTGT TCGTTCAGTA
GGTATTCGTC CGCTTGAAGA TGCAATTGTT GTTACAGCAA AACAAACTAC AGTAAAAAAC
TTTTCACTTT CTGAAACTCA GGAAGATCTT GATGAAGTAG TAATTACAAA AAATAAGTAC
AAACAAGATA AGCCGTCGTT GTCATTGCGT CTTCAGACTC CTGTTCTTGA AATTCCTCAA
AATATTCAAA TTGTAAGTGC ACAAACACTA AAAGACCAGC AGATTACAAG TATGAGTGAC
GGTGTTATTC GTAACGTAAG TGGTGCTGTA CGTTTAGAAC ACTGGGGAGA TTTGTATACC
AATATTACGA TGCGTGGTAC TCAGATTCAG GCTTTCCGTA ACGGATTTAA TGTGGTATCT
TCTTTCTGGG GACCTTTAAC AGAGGATATG AGTTTTGTAG ATCATATCGA GTTTGTAAAA
GGACCTGCAG GATTCATGCT TTCGAGCGGT GATCCAAGCG GACTTTATAA TGTAGTAACT
AAAAAGCCTA CCGGAATTTC AAAAGGTGAG GTTACGGCAA CTGTAGGAAG CTATGATTTT
TACAGAGTGA GCCTTGATCT TGACGGAAAA CTGGATAAAG CCGGAAAACT GCTTTACAGA
TTTAATGGGG CAGCTCAAAA GAAAAGATCT CATCGTCCGT TTGAACACAA TGACCGTTAT
GTAATTGCTC CTGTAATTTC ATATCAAATT GATGATAAAA CAAAAATTAC AGCTGAATAT
AATTTTCAAT ATGCTAACAT GACTGAGGTT GGTTCTTATT ATGTTTTTGG ACCTCAAGCC
GGCGGTTATG CAGCTTTACC GCGTAATTTT ACAATGACTC AGCCAGGATT ACCTGATACT
AATATTCAGG ATCACAGTGG TTATTTGCAA TTTGAACATA AATTTGATGA TAACTGGAAA
CTAACAGCTC AGACTTCATA TTTTAAATAT ATCCAGCAGG GATATAGTTC ATGGCCTGGT
GTTGTAGGTC CCGGACCAGC CGACAGAGAT TTTGACGGTA CACCAGAAGG TAATCTTGCT
TATGGTGAAA TTATTAGAAA CGTGGGTATC TGGGATGCTG AAAGTAATAT GTATTTAGGA
CAGATTTTCG TTAACGGAAA ATTTAAAACA GGTGCTGTCT CTCACAAAAT ATTGGGAGGA
ATTGATTTAG GAAATAAAGA TTATATGGCA GACTGGGGAC AATCTCATGA TCTTGATACT
GTAGATAATC CTTTTAATGT ATATAATCCA AATTATGGAA CTCCATCAAA TGGTTTTCCG
GCTTTTGATC ATGAAACGCC GCTCAGCCAG AGAGCAGGAG GAATTATGAG TTCAGAATAT
GCTGCAGGTT ATATTCAGGA TGAACTGGGT TTCTTTGAAA ACAGATTAAG ATTGACTCTT
GCTGCAAGAT ATACATGGTT AAGCCAATCG AGCTGGGGAG ATACACAGGA AGATACCCAT
ATTACACCTC GTGCCGGACT TAGTTTTTCT ATAGATTCAA ATACAAGTGT TTACGGATTA
TACGATCAGG CATTTATTCC TCAATCGGGA ATTACTCAAA ATGGAGATCC TATAAAACCG
CTTACAGGAA ATAATCTGGA GTTTGGTATT AAAAGAGACT GGTTTGACGG ATCATGGAAT
ACTACACTTT CGGCTTATAG AATTACCAAG AAAAATGAGC TTACATCTGA TCCAAAAAAT
GGACCTAATG ATATTTATAA AGTTATTTTG GGAGAAAAAA GAGCTGAAGG TATTGAATTT
GATGTTAGAG GAAAAATCAT TGACGGCTTA AATGTAATTG CTAATTATGC TTTTACAGAA
TCTATTGTGA CCTCTTCTAA TGTTCCAACT ATTGCTGCAG GTTCTACAGT TCCCGGATAT
GCAAAACATA CAGCAAATGC ATGGTTAAAT TATACAATAC AAAGCGGTAA ATTAAAAGGT
TTTGGAGCTT CTATTGGAGG AACTGGTCTG GTAGGCCGTC AGACTGATAC TTGGAGTGTA
GGTCTTGAAA GACTTCCAAA CTATTTTAAA TTAGATGGAG GTTTGTCTTA TGAAACAGGG
AAAATTAAAG TTACGGCAAA CGTATTTAAT ATTTTAGATA AGTATTTATA CAGCGGTTCT
TACTATGAGT GGCTGCAGGC TTATTACTGG CAGACAGAAG CGCCAAGAAA CTTTAGAGTT
GGCGTGACAT ACAAATTGTT TTAA
|
|---|
| Protein sequence | MSMSIIKKIC FFIVLLTSFT MMSQELGKVS GKVALSGNEP LEGISVVLKG TKHSSVTNAN
GQYEIRNVKP GSYTISVRSV GIRPLEDAIV VTAKQTTVKN FSLSETQEDL DEVVITKNKY
KQDKPSLSLR LQTPVLEIPQ NIQIVSAQTL KDQQITSMSD GVIRNVSGAV RLEHWGDLYT
NITMRGTQIQ AFRNGFNVVS SFWGPLTEDM SFVDHIEFVK GPAGFMLSSG DPSGLYNVVT
KKPTGISKGE VTATVGSYDF YRVSLDLDGK LDKAGKLLYR FNGAAQKKRS HRPFEHNDRY
VIAPVISYQI DDKTKITAEY NFQYANMTEV GSYYVFGPQA GGYAALPRNF TMTQPGLPDT
NIQDHSGYLQ FEHKFDDNWK LTAQTSYFKY IQQGYSSWPG VVGPGPADRD FDGTPEGNLA
YGEIIRNVGI WDAESNMYLG QIFVNGKFKT GAVSHKILGG IDLGNKDYMA DWGQSHDLDT
VDNPFNVYNP NYGTPSNGFP AFDHETPLSQ RAGGIMSSEY AAGYIQDELG FFENRLRLTL
AARYTWLSQS SWGDTQEDTH ITPRAGLSFS IDSNTSVYGL YDQAFIPQSG ITQNGDPIKP
LTGNNLEFGI KRDWFDGSWN TTLSAYRITK KNELTSDPKN GPNDIYKVIL GEKRAEGIEF
DVRGKIIDGL NVIANYAFTE SIVTSSNVPT IAAGSTVPGY AKHTANAWLN YTIQSGKLKG
FGASIGGTGL VGRQTDTWSV GLERLPNYFK LDGGLSYETG KIKVTANVFN ILDKYLYSGS
YYEWLQAYYW QTEAPRNFRV GVTYKLF
|
|---|
| |