Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_2378 |
Symbol | |
ID | 5092110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 2847835 |
End bp | 2849739 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 644741806 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001194724 |
Protein GI | 146300133 |
COG category | [R] General function prediction only |
COG ID | [COG3858] Predicted glycosyl hydrolase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.903959 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGAAC TTTTAACGAT TTCTCTTGTG TTTGTTTTGT CTTTTAACAA AATCACTGCA CAAGATTCAA TAATTGAGCA CAAAATTCAA AAAGGAGAAA CTGCTTATTT CATTGCCCAA AAATACAAGG TTTCTGTAGA GGAGATTTAC AAACTCAACC CCGAATCGCA AAACGGAATC AAAGACAGTC AAATTATTAA GATTCCCGTT CATTCTTCAG AAAAAACAAA TTCAGACCAG CAGATTACCC ACATAGTTGG AGAAAAAGAA ACGCTGTACG GTTTATCAAA ACAATACCAT GTTTCGGTAG AAGCTATTCA AAATGCCAAT CAGGCGATTT TGATAAACGG ACTTCAAGTG GGGCAGGAAT TAAATATTCC AAATTCTTCA AATTTATCTA AAACTGAAAC AGCAGGTTCA TCAAAAGTGA CACATCAGGT TGTGGCAAAA GAATCTTTGT TTAGTATTGC CAGACAATAC AATGTTTCGG TTCAGGATTT AGAAAATCTC AACAAAGATA TTTTGATTAA CGGATTGCAG ATTGGGCAGA CAATCGCTAT TCCGAATAAA AGAAAAACCT TAGACGGAAG AGTCCGCGTT ATAAATCAGG AAACAGTTTT TCATGTGGTT GAACCAAAAG AAACTAAATT TTCGATTTCT AAAAAATACG GTATTTCAAT CGGACAGTTA GAATCTCAAA ATCCGGAAAT TGTAAACGGA TTAATTGTTG GAAACAAATT AGCGATCAAT ACAAAAGAAA TAAAGCCAGC AAACGAAAGC GAAGAGTTAA TGCTTGCCCT TGCCGAAAAA CAAGTTGTAG TTGAGAAAAC AAAAGCCAAA ACGGTTGAAA TAGAAGATTT AAAAGACAGA TTGGTTGTTC AAAAAGAAAT GAATCAGAAG ATCATAAAGA TTAATGATTT AAAAGTGAAT CTAAATGATA TGAATGGTTC TAAAGAAAAC TCGGTAGAAA AACTGCGTTT GGTTTTAGAA GCCAATAAAA ATGTTCAGGA CGTTTTAATG GCTAAATTAG ATTCATTGGT AAATACGATG AATAATGATT TGAAAGAATT AAAACGAATG GATATTTTAA ATGTTGATGA ATCGAAACGT TTAGAAAAAC AATCGTATGA AAGCATCGGA AAAACCAGTG AATTATCTTC TCAATTGAAA AAAGAACTTG CTGAAAACCG TAAAGCTTAT GCAGGATTAA TGAATAAAGT TGAGAAAATT GCTGTAGAAG AAAATCAGGA ATACAAAAAG AAAATCCGAG AAAGCGAAAA AAATAATAAT GTTACTTCAA TTCAGCAGAG ACTTTCTTTA GAAGAAATTA AACGTTATAA AATCGAGCAG GAACAGGGTG ATGCCAAAAA TCAGCTGCTG ATTTCTAAAA TTGATTCGCT GGACACTCAA AAACAAATTG AAGTAAAACG TCATATCAGC AAAGCATCTT ATTATAGTAT GGAAGCCCGA AAATTTGATG ATAAACTGGC TTTGGTAAAA TTAAAGAAAT ACCAGGATGA AGCTGTTAAA AAATCAAACG GTGCAGAAAC TTCAAAAATA GTTTCATTAG AAGAGATGCG TCGGGAGCTG AAAGAGAATC CTTTAAAGAA TGAAAAAAAT ATAAAGATCG AAGTTTATGA TAATCTTAAA GAAGTTTCGA ACGGCTATTA CTTAGTTTTA GGTATATTTA CAGACGCAGT ACCAAGAGAT AAGTTAATTA TGCAGCTTAT TGATTCAGGT AACTTTAACG CTGGTTTTTT CTTTAATATA AACAGCCTTT CTTATTATGT ATATGCTGAT AAGTTCCAAA ATATGGACGA AGTTTTATAT CAGTGCAAGA AAAAGGAAGA AGATGAGTTA TATAAGAATA TTGTTATTAC GAAGTTAGAA ATTGATCTTC GATAG
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Protein sequence | MRELLTISLV FVLSFNKITA QDSIIEHKIQ KGETAYFIAQ KYKVSVEEIY KLNPESQNGI KDSQIIKIPV HSSEKTNSDQ QITHIVGEKE TLYGLSKQYH VSVEAIQNAN QAILINGLQV GQELNIPNSS NLSKTETAGS SKVTHQVVAK ESLFSIARQY NVSVQDLENL NKDILINGLQ IGQTIAIPNK RKTLDGRVRV INQETVFHVV EPKETKFSIS KKYGISIGQL ESQNPEIVNG LIVGNKLAIN TKEIKPANES EELMLALAEK QVVVEKTKAK TVEIEDLKDR LVVQKEMNQK IIKINDLKVN LNDMNGSKEN SVEKLRLVLE ANKNVQDVLM AKLDSLVNTM NNDLKELKRM DILNVDESKR LEKQSYESIG KTSELSSQLK KELAENRKAY AGLMNKVEKI AVEENQEYKK KIRESEKNNN VTSIQQRLSL EEIKRYKIEQ EQGDAKNQLL ISKIDSLDTQ KQIEVKRHIS KASYYSMEAR KFDDKLALVK LKKYQDEAVK KSNGAETSKI VSLEEMRREL KENPLKNEKN IKIEVYDNLK EVSNGYYLVL GIFTDAVPRD KLIMQLIDSG NFNAGFFFNI NSLSYYVYAD KFQNMDEVLY QCKKKEEDEL YKNIVITKLE IDLR
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