| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_1935 |
|---|
| Symbol | |
|---|
| ID | 8416242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 2268192 |
|---|
| End bp | 2268833 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 645024908 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003182288 |
|---|
| Protein GI | 257791682 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000393762 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.0999283 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTAG GTTGCGAGGC TCTGGGAGCC GGAACGTCCC GGAGCGACCG TCCGCTTGCT
GCAGCGAACG GACGAAAACC GCACGCTGGC CAGCCGAGCG GAACCGTGCA CGTCCTCGAC
GCCGTGGCGC TCGAAAGCGC CATGGAGCGC TGGGGCGACA CCGTGCTTCG CTTGGCTACC
AGCCGCATGG GCAGCGTCGC CGACGCTGAG GACGTGTTTC AAACCGTGTT CATGCGCCTG
CTGCAATCGA GAGAGCGGTT CACCGACGAC GAGCATCTGA AGGCGTGGCT TCTGCGCGTG
ACGATCAACT GCTGCAACGA CGTGCACCGC AGCCCCTGGA GCAAGCGCCG CGCCGAGCTT
GACGATGCCA CGCTGTCCAC GTTGCGCGCC TCCGAGCTGG ACGAGCCGGG ACGCGAAGCG
CCCGACGACG CTTTCGGCAA CCGCAACCTC GAGCCCGGCG ACTTGGCCGC GGCTCTCGCC
CGCCTCACGC CCCAGCAGCG CACCGCCGTG CACCTGTTCT ACTTCGAAGG ATATGCAACC
GACGAGATAG CGCAGATCAC CGGCGAGCGC TCAGGCACCG TCCGATCCCA CCTCCACCGC
GCGCGCAAGG CCCTCAAGAT CAATCTAGGA GCGCACTCAT GA
|
|---|
| Protein sequence | MDVGCEALGA GTSRSDRPLA AANGRKPHAG QPSGTVHVLD AVALESAMER WGDTVLRLAT
SRMGSVADAE DVFQTVFMRL LQSRERFTDD EHLKAWLLRV TINCCNDVHR SPWSKRRAEL
DDATLSTLRA SELDEPGREA PDDAFGNRNL EPGDLAAALA RLTPQQRTAV HLFYFEGYAT
DEIAQITGER SGTVRSHLHR ARKALKINLG AHS
|
|---|
| |