| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Elen_1725 |
|---|
| Symbol | |
|---|
| ID | 8416024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Eggerthella lenta DSM 2243 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013204 |
|---|
| Strand | + |
|---|
| Start bp | 2031565 |
|---|
| End bp | 2033292 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 645024691 |
|---|
| Product | oligopeptide transporter, OPT superfamily |
|---|
| Protein accession | YP_003182079 |
|---|
| Protein GI | 257791473 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1297] Predicted membrane protein |
|---|
| TIGRFAM ID | [TIGR00728] oligopeptide transporters, OPT superfamily
[TIGR00733] putative oligopeptide transporter, OPT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.116386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.268809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTG TCAAAGGGCA GCTGACGCTG CGCGGCATCG TCATAGGCTG CGTCGGTTGC
GCCATCATCA CCGCGGCATC GGTGTACACG GCCCTCAAGA TGGGGGCGCT TCCTTGGCCC
ATCGTGTTCG CGGCCATCAT CTCGCTGTTC TTCCTCAAGG CCCTCGGGCA CGGCAAGGCC
AGCCTCAACG AGGCGAACGT CACGCACACC GTGATGAGCG CCGGCGCCAT GGTGGCGGGC
GGCCTGGCCT TCACCATCCC CGGCATCTGG ATGCTGGGCT ACGCCGACGA GGTGGGCTGG
TTCGAGATGC TCCTCGTAGC CGTCTCGGGC GTCATCATGG GCCTCGTCTG CACCGCGCTT
CTGCGCCGCC ACTTCATCGA GGACTCCGAG CTGGAGTACC CCATCGGCGA AGCGGCCGCC
CAGACGCTCA TCGCGGGCGA TTCCGGCGGC AAGACCGGCT GGAAGCTGTT CGGCTCCATG
GGCTTCGCGG GCGCGTTCAC GGCGTTGCGC GATTTCTTCG GCGTGATCCC CGCGATGCTC
TTCGGCAACG CCGCGGTCCC CGGCGTTGCG TTCGGCATCT ACCTGTCGCC GATGCTTCTG
GCCGTGGGCT TCCTCGTGGG CACGGGCGCC GTCGTCGTGT GGTTCGTCGG AGCGCTGCTG
GCGAACTTCG GCATCATCGT GGGCGGCTCG GCCGCGGGAC TCTGGGACGT GGCGTCCGCG
CAGGGCATCG TGTCCAGCCT CGGTATGGGC GTCATGATGG GCGCGGGCCT GGGCGTCATC
TTCAAGAACA TCCTGCCCAA GGCCTGGCGC ATGCTGCGCG ACGCCCGCAG CTCGAACGCG
TTCGGCCTCA CCGCCGCAAG CACCATGGAT GCGCCCGCAA GCGGCGCTAA GGACGGACGG
CTGCGCATCG GCAGCTTCCG CCTCACCGCC GGGCTGGCCG CGCTCGCCGT GGCCGCCGTC
GCGCTCATCG TCTGCTTCGG CCTGCAGCTG GGCCCCGTCC CGGCCGTCAT CGTGGTGCTG
CTCGCCTTCG TCGCCACGGC CATGAGCGCG CAGAGCGTCG GCCAGACGGG CATCGACCCC
ATGGAGATAT TCGGCCTCAT CGTGCTTTTG GCCGTGGCGG CCGTATCCAG CGTGCCGCAG
GTGCAGCTTT TCTTCGTCGC GGGCATCGTG GCCGTGGCGT GCGGGCTGGC CGGCGACGTG
ATGAACGACT TCCACGCCGG CCACGTGCTG GGCACCAGCC CCAAGGCGCA GTGGATCGGC
CAGGCCATCG GCGCCGTGCT GGGCGCCTTG GTGGCCGTCG CCGTCATGGC GATCCTCGTG
AGCGCGTACG GCCCCGAGTC GTTCGGCCCC ACGGCGTCGT TCGTGTCCGC GCAGGCGTCC
GTCGTGGCCA CCATGGTGTC GGGCATCCCC TCGGTGCCGG CGTTCGCCAT CGGGCTTGCG
GCGGGATTCG TCCTCTACCT GCTGAACTTC CCCGCCATGA TGCTGGGGCT GGGCATCTAC
CTGCCCTTCT ACATGTCGCT GACCGCGTTT CTGGGAGCCA TGGCCAAAGT CGCCTACGAC
GCCGTGTGCA AGCTGCGCCG CAAGGGGCTC TCGCCCGAGG CGGCCGCGGA GAAGGAGAAG
GCCCAGGGCG AAACGGGCCT CGTGGTGTCG TCCGGCCTGC TGGGCGGCGA ATCCATCGTA
GGCGTCCTGG TGGCGCTCGC CGCCGTGGCG ACGGGCCTGG GAGCGTAA
|
|---|
| Protein sequence | MDSVKGQLTL RGIVIGCVGC AIITAASVYT ALKMGALPWP IVFAAIISLF FLKALGHGKA
SLNEANVTHT VMSAGAMVAG GLAFTIPGIW MLGYADEVGW FEMLLVAVSG VIMGLVCTAL
LRRHFIEDSE LEYPIGEAAA QTLIAGDSGG KTGWKLFGSM GFAGAFTALR DFFGVIPAML
FGNAAVPGVA FGIYLSPMLL AVGFLVGTGA VVVWFVGALL ANFGIIVGGS AAGLWDVASA
QGIVSSLGMG VMMGAGLGVI FKNILPKAWR MLRDARSSNA FGLTAASTMD APASGAKDGR
LRIGSFRLTA GLAALAVAAV ALIVCFGLQL GPVPAVIVVL LAFVATAMSA QSVGQTGIDP
MEIFGLIVLL AVAAVSSVPQ VQLFFVAGIV AVACGLAGDV MNDFHAGHVL GTSPKAQWIG
QAIGAVLGAL VAVAVMAILV SAYGPESFGP TASFVSAQAS VVATMVSGIP SVPAFAIGLA
AGFVLYLLNF PAMMLGLGIY LPFYMSLTAF LGAMAKVAYD AVCKLRRKGL SPEAAAEKEK
AQGETGLVVS SGLLGGESIV GVLVALAAVA TGLGA
|
|---|
| |