Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_3860 |
Symbol | ampC |
ID | 6067598 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | + |
Start bp | 4218132 |
End bp | 4219265 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641603275 |
Product | beta-lactamase |
Protein accession | YP_001726791 |
Protein GI | 170021837 |
COG category | [V] Defense mechanisms |
COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.027383 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAAAA CGACGCTCTG CGCCTTATTA ATTACCGCCT CTTGCTCCAC ATTTGCTGCC CCCCAAAAAA TCAACGATAT TGTGCATCGC ACAATTACCC CGCTTATAGA GCAACAAAAG ATCCCCGGTA TGGCGGTGGC GGTAATTTAT CAGGGTAAAC CTTATTACTT TACCTGGGGC TATGCGGACA TCGCCAAAAA GCAGCCCGTC ACACAGCAAA CGTTGTTTGA GTTAGGTTCG GTCAGCAAAA CATTTACGGG CGTGCTTGGT GGCGACGCTA TTGCTCGAGG GGAAATCAAG TTAAGCGATC CCGCAACAAA ATACTGGCCT GAACTTACCG CTAAACAGTG GAATGGGATC ACACTATTAC ATCTCGCAAC CTACACTGCT GGCGGCCTGC CATTGCAGGT GCCGGATGAA GTGAAATCCT CAAGCGACTT GCTGCGCTTC TATCAAAACT GGCAGCCTGC ATGGGCTCCA GGAACACAAC GTCTGTATGC CAACTCCAGT ATCGGTTTGT TCGGCGCACT GGCTGTGAAG CCGTCTGGTT TGAGTTTTGA GCAGGCGATG CAAACTCGTG TCTTCCAGCC ACTCAAACTC AACCATACAT GGATTAATGT ACCGCCCGCA GAAGAAAAGA ATTACGCCTG GGGATATCGC GAAGGTAAGG CAGTGCATGT TTCGCCAGGG GCGTTAGATG CTGAAGCTTA TGGTGTGAAG TCGACCATTG AAGATATGGC CCGCTGGGTG CAAATCAATT TAAAACCCCT TGATATCAAT GAGAAAACGC TTCAACAAGG GATACAAGTG GCACAATCTC GCTACTGGCA AACCGGCGAT ATGTATCAGG GTCTGGGCTG GGAAATGCTG GACTGGCCGG TAAATCCTGA CATCATCGTT AACGGCAGTG ACAATAAAAT TGCACTGGCA GCACGCCCCG TAAAAGCGAT TACGCCCCCA ACTCCTGCAG TACGCGCATC ATGGGTACAT AAAACAGGGG CGACCGGCGG ATTTGGTAGC TATGTCGCGT TTATTCCAGA AAAAGAGCTG GGTATCGTGA TGCTGGCTAA CAAAAACTAT CCCAATCCAG CGAGAGTCGC CGCCGCCTGG CAGATTCTCA ACGCTCTGCA GTAA
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Protein sequence | MFKTTLCALL ITASCSTFAA PQKINDIVHR TITPLIEQQK IPGMAVAVIY QGKPYYFTWG YADIAKKQPV TQQTLFELGS VSKTFTGVLG GDAIARGEIK LSDPATKYWP ELTAKQWNGI TLLHLATYTA GGLPLQVPDE VKSSSDLLRF YQNWQPAWAP GTQRLYANSS IGLFGALAVK PSGLSFEQAM QTRVFQPLKL NHTWINVPPA EEKNYAWGYR EGKAVHVSPG ALDAEAYGVK STIEDMARWV QINLKPLDIN EKTLQQGIQV AQSRYWQTGD MYQGLGWEML DWPVNPDIIV NGSDNKIALA ARPVKAITPP TPAVRASWVH KTGATGGFGS YVAFIPEKEL GIVMLANKNY PNPARVAAAW QILNALQ
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