| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_3834 |
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| Symbol | |
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| ID | 6064737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 4187981 |
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| End bp | 4190422 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641603246 |
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| Product | exoribonuclease R |
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| Protein accession | YP_001726765 |
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| Protein GI | 170021811 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000264601 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCTGAAAAAT ACGCGAATCC CATCCCTAGT
CGGGAATTTA TCCTCGAACA TTTAACCAAA CGTGAAAAAC CGGCCAGCCG TGATGAGCTG
GCGGTAGAAC TGCACATTGA AGGCGAAGAG CAGCTTGAAG GCCTGCGTCG CCGCCTGCGC
GCGATGGAGC GCGATGGTCA ACTGGTCTTC ACTCGTCGTC AGTGCTATGC GCTGCCGGAA
CGCCTCGACC TGGTGAAAGG TACCGTTATT GGCCACCGTG ATGGCTACGG CTTTCTGCGG
GTTGAAGGGC GTAAAGATGA TTTGTATCTC TCCAGCGAGC AGATGAAAAC CTGCATTCAT
GGCGATCAGG TGCTGGCGCA GCCGCTGGGC GCTGACCGTA AAGGTCGTCG TGAAGCGCGT
ATTGTCCGCG TACTGGTGCC AAAAACCAGC CAGATTGTTG GTCGCTACTT TACTGAAGCG
GGCGTCGGCT TTGTGGTTCC TGACGATAGC CGTCTGAGCT TCGATATCTT AATCCCGCCC
GATCAGATCA TGGGCGCGCG GATGGGCTTT GTGGTCGTAG TCGAACTGAC TCAGCGTCCG
ACTCGCCGCA CCAAAGCGGT GGGTAAAATC GTCGAAGTGC TGGGCGACAA TATGGGCACC
GGCATGGCGG TTGATATCGC TCTGCGTACC CATGAAATTC CGTACATCTG GCCGCAGGCT
GTTGAGCAAC AGGTTGCCGG GCTGAAAGAA GAAGTGCCGG AAGAAGCAAA AGCGGGCCGT
GTTGATCTGC GCGATTTACC GCTGGTCACC ATTGATGGCG AAGACGCCCG TGACTTTGAC
GATGCAGTTT ACTGCGAGAA AAAACGCGGC GGCGGCTGGC GTTTATGGGT CGCGATTGCC
GACGTCAGCT ACTATGTGCG TCCGCCAACG CCGCTGGACA GAGAAGCGCG TAACCGTGGC
ACGTCGGTGT ACTTCCCTTC GCAGGTTATC CCGATGCTGC CGGAAGTGCT CTCTAACGGC
CTGTGTTCGC TCAACCCGCA GGTAGACCGC CTGTGTATGG TGTGCGAGAT GACGGTTTCG
TCGAAAGGCC GCCTGACGGG CTACAAATTC TACGAAGCGG TGATGAGCTC TCACGCGCGT
CTGACCTACA CCAAAGTCTG GCATATTCTG CAGGGCGATC AGGATCTGCG CGAGCAGTAC
GCCCCGCTGG TTAAGCATCT CGAAGAGTTG CATAACCTCT ATAAAGTGCT GGATAAAGCC
CGTGAAGAAC GCGGTGGGAT CTCATTTGAG AGCGAAGAAG CGAAGTTCAT TTTCAACGCT
GAACGCCGTA TTGAACGTAT CGAACAGACC CAGCGTAACG ACGCGCACAA ATTAATTGAA
GAGTGCATGA TTCTGGCGAA TATCTCGGCG GCGCGTTTCG TTGAGAAAGC CAAAGAACCG
GCACTGTTCC GTATTCACGA CAAGCCGAGC ACCGAAGCGA TTACCTCTTT CCGTTCAGTG
CTGGCGGAGC TGGGGCTGGA GCTGCCGGGT GGTAACAAGC CGGAACCGCG TGACTACGCG
GAACTGCTGG AGTCGGTTGC CGACCGTCCT GATGCAGAAA TGCTGCAAAC CATGCTGCTA
CGCTCGATGA AACAGGCGAT TTACGATCCA GAAAACCGTG GTCACTTCGG TCTGGCATTG
CAGTCCTATG CGCACTTTAC TTCACCGATT CGTCGTTATC CTGACCTGAC GCTGCACCGC
GCCATTAAAT ATCTGCTGGC GAAAGAGCAG GGGCATCAGG GCAACACCAC TGAAACCGGC
GGCTACCATT ATTCGATGGA AGAGATGTTG CAACTGGGTC AGCACTGTTC GATGGCGGAA
CGTCGTGCCG ACGAAGCAAC GCGCGATGTC GCTGACTGGC TGAAGTGTGA CTTCATGCTC
GACCAGGTAG GTAACGTCTT TAAAGGCGTA ATTTCCAGCG TCACTGGCTT TGGCTTCTTC
GTCCGTCTGG ACGACTTGTT CATTGATGGT CTGGTCCATG TCTCTTCGCT GGACAATGAC
TACTATCGCT TTGACCAGGT AGGGCAACGC CTGATGGGGG AATCCAGCGG CCAGACTTAT
CGCCTGGGCG ATCGCGTGGA AGTTCGCGTC GAAGCGGTTA ATATGGACGA GCGCAAAATC
GACTTTAGTC TGATCTCCAG TGAACGCGCA CCGCGCAACG TCGGTAAAAC GGCGCGCGAG
AAAGCGAAAA AAGGCGATGC AGGCAAAAAA GGCGGCAAGC GTCGTCAGGT CGGTAAAAAG
GTAAACTTTG AGCCAGACAG CGCCTTCCGC GGTGAGAAAA AAACGAAGCC GAAAGCGGCG
AAGAAAGACG CGAGAAAAGC GAAAAAGCCA TCGGCGAAAA CGCAGAAAAT AGCCGCAGCG
ACCAAAGCGA AGCGTGCGGC GAAGAAAAAA GTGGCAGAGT GA
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| Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASRDEL AVELHIEGEE QLEGLRRRLR
AMERDGQLVF TRRQCYALPE RLDLVKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH
GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTEA GVGFVVPDDS RLSFDILIPP
DQIMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDIALRT HEIPYIWPQA
VEQQVAGLKE EVPEEAKAGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPPT PLDREARNRG TSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS
SKGRLTGYKF YEAVMSSHAR LTYTKVWHIL QGDQDLREQY APLVKHLEEL HNLYKVLDKA
REERGGISFE SEEAKFIFNA ERRIERIEQT QRNDAHKLIE ECMILANISA ARFVEKAKEP
ALFRIHDKPS TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESVADRP DAEMLQTMLL
RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLTLHR AIKYLLAKEQ GHQGNTTETG
GYHYSMEEML QLGQHCSMAE RRADEATRDV ADWLKCDFML DQVGNVFKGV ISSVTGFGFF
VRLDDLFIDG LVHVSSLDND YYRFDQVGQR LMGESSGQTY RLGDRVEVRV EAVNMDERKI
DFSLISSERA PRNVGKTARE KAKKGDAGKK GGKRRQVGKK VNFEPDSAFR GEKKTKPKAA
KKDARKAKKP SAKTQKIAAA TKAKRAAKKK VAE
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