Gene EcolC_3004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_3004 
Symbol 
ID6065946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp3285048 
End bp3285629 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content52% 
IMG OID641602421 
ProductLPS-assembly lipoprotein RlpB 
Protein accessionYP_001725956 
Protein GI170021002 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2980] Rare lipoprotein B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00131027 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGATATC TGGCAACATT GTTGTTATCT CTGGCGGTGT TAATCACCGC CGGGTGTGGC 
TGGCATCTGC GTGATACCAC GCAGGTTCCT TCCACTATGA AGGTCATGAT TCTGGACTCA
GGCGATCCGA ACGGGCCATT AAGCCGTGCG GTGCGTAACC AGTTACGTCT GAATGGTGTC
GAGTTGCTTG ATAAAGAAAC CACGCGTAAG GACGTTCCAT CCCTGCGTTT GGGTGCTGTA
TCAATCTCGC AGGATACCGC GTCGGTTTTC CGTAATGGTC AAACTGCGGA ATATCAGATG
GTGATGACTG TTAGCGCGTC GGTATTGATT CCTGGACGAG ATATCTACCC GATTAGCGCC
AAAGTCTTCC GTTCGTTCTT CGATAACCCG CAAATGGCGT TAGCGAAAGA TAACGAGCAG
GAAATGATCA TTAAAGAGAT GTACGACCGT GCTGCCGAAC AGCTGATTCG TAAGCTACCA
AGCATCCGTG CTGCGGATAT TCGTTCCGAC GAAGAACAGA CGTCGACCAC AACGGATACT
CCGGCAACGC CTGCACGCGT CTCCACCACG CTGGGTAACT GA
 
Protein sequence
MRYLATLLLS LAVLITAGCG WHLRDTTQVP STMKVMILDS GDPNGPLSRA VRNQLRLNGV 
ELLDKETTRK DVPSLRLGAV SISQDTASVF RNGQTAEYQM VMTVSASVLI PGRDIYPISA
KVFRSFFDNP QMALAKDNEQ EMIIKEMYDR AAEQLIRKLP SIRAADIRSD EEQTSTTTDT
PATPARVSTT LGN