| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_2955 |
|---|
| Symbol | |
|---|
| ID | 6065660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 3222525 |
|---|
| End bp | 3226718 |
|---|
| Gene Length | 4194 bp |
|---|
| Protein Length | 1397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641602366 |
|---|
| Product | YD repeat-containing protein |
|---|
| Protein accession | YP_001725908 |
|---|
| Protein GI | 170020954 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAA AACCGGCGGC GCGTCAGGGC GACATGACGC AGTATGGCGG TAGCATTGTT
CAGGGTTCAG CCGGGGTACG TATTGGTGCC CCCACCGGCG TGGCCTGTTC GGTGTGCCCC
GGCGGGGTGA CGTCCGGCCA TCCGGTCAAT CCGCTGCTGG GTGCAAAGGT CCTTCCCGGT
GAAACCGACA TCGCCCTGCC CGGCCCGCTG CCGTTCATTC TCTCCCGCAC CTACAGCAGT
TACCGGACAA AAACGCCCGC GCCGGTGGGG AGCCTCGGCC CCGGCTGGAA AATGCCTGCG
GATATCCGCT TACAGCTGCG CGATAACACA CTGATACTCA GTGATAACGG CGGCAGAAGC
CTGTATTTTG AGCACCTGTT TCCCGGTGAG GACGGTTACA GCCGCAGCGA ATCACTCTGG
CTGGTGCGCG GCGGTGTGGC GAAACTGGAT GAAGGTCACC GGCTGGCCGC ACTCTGGCAG
GCGCTGCCGG AAGAGCTTCG CCTGAGTCCG CATCGTTATC TGGCGACAAA CAGTCCGCAG
GGGCCGTGGT GGGTACTCGG CTGGTGTGAG CGGGTGCCGG AAGCGGATGA GGTGCTGCCT
GCGCCGCTGC CGCCGTACCG GGTACTGACC GGGCTGGTGG ACCGCTTCGG GCGCACACAG
ACGTTCCACC ACGAAGCCGC CGGTGAATTC AGCGGCGAAA TCACCGGCGT GACGGATGGT
GCCGGGCGTC ACTTCCGGCT GGTACTGACC ACGCAGGCGC AGCGGGCAGA AGAAGCCCGG
CAGCAGGCCT CTTCCGGCGG GACGGAACCG TCCGCTTTTC CTGATACCCT GCCGGGTTAC
ACCGAATATG GCCGGGACAA CGGCATCCGT CTGTCTGCCG TGTGGCTGAC GCACGACCCG
GAATACCCGG AGAATTTACC TGCCGCGCCG CTGGTGCGCT ATGGCTGGAC GCCACGCGGC
GAACTGGCGG TGGTGTATGA CCGTAGTGGC AAACAGGTGC GCAGCTTTAC TTACGATGAT
AAATACCGGG GCCGGATGGT GGCGCACCGT CACACGGGCC GGCCGGAAAT CCGTTACCGT
TACGACAGCG ACGGGCGGGT GACAGAACAG CTAAACCCGG CAGGCTTAAG CTACACGTAT
CAGTATGAGA AAGACCGCAT CACCATCACC GACAGCCTGG ACCGCCGTGA AGTGCTGCAC
ACGCAGGGCG AAGCCGGGCT GAAGCGGGTG GTGAAAAAGG AACACGCGGA CGGCAGCGTC
ACGCAGAGTC AGTTTGACGC CGTGGGCAGG CTCAGGACAC AGACGGATGC CGCAGGCCGG
ACAACAGAAT ACAGCCCGGA TGTGGTGACG GGCCTCATCA CGCGCATCAC CACGCCGGAT
GGCAGGGCAT CGGCGTTTTA CTATAACCAC CACAGCCAGT TAACGTCAGC CACCGGGCCT
GACGGGCTGG AAATACGCCG GGAATATGAT GAATTGGGCC GTCTGATTCA GGAAACTGCC
CCTGACGGCG ATATCACCCG CTACCGTTAT GATAATCCAC ACAGTGACTT ACCCTGCGCA
ACGGAAGATG CCACCGGCAG CCGGAAAACC ATGACGTGGA GCCGTTACGG TCAGTTGCTG
AGCTTCACCG ACTGTTCCGG TTATGTAACC CGTTATGACC ATGACCGCTT CGGGCAGATG
ACGGCGGTGC ACCGCGAGGA AGGGCTGAGT CAGTACCGCG CATACGACAG CCGTGGACAG
TTAATTGCCG TGAAAGACAC GCAGGGCCAT GAAACGCGGT ATGAATACAA CATCGCCGGT
GACCTGACCG CCGTCATTGC CCCGGACGGC AGCAGAAACG GGACACAGTA CGATGCGTGG
GGAAAGGCCG TCCGTACCAC GCAGGGCGGG CTGACCCGTA GTATGGAATA CGATGCTGCC
GGACGGGTCA TCCGCCTGAC CAGTGAAAAC GGCAGCCACA CCACCTTCCG TTACGATGTA
CTCGACCGGC TGATACAGGA AACCGGCTTT GACGGCCGCA CACAGCGTTA TCACCACGAC
CTGACCGGCA AACTTATCCG CAGCGAGGAT GAGGGGCTGG TCACCCACTG GTACTATGAC
GAAGCAGACC GCCTCACTCA CCGCACCGTG AAGGGTGAAA CCGCAGAGCA GTGGCAGTAT
GACGAACGCG GCTGGCTGAC AGACATCAGC CATATCAGCG AAGGGCACCG GGTGGCGGTG
CACTATGGTT ATGACAGTAA AGGCCGCCTC GCCAGTGAAC ACCTGACGGT GCATCATCCG
CAGACGAATG AACTGCTCTG GCAGCATGAG ACCAGACATG CGTACAACGC ACAGGGACTG
GCGAACCGCT GTATACCGGA CAGCCTGCCC GCCGTGGAAT GGCTGACCTA CGGCAGCGGC
TGGCTGGCAG GCATGAAGCT CGGCGACACA CCGCTGGTGG ATTTCACCCG CGACCGCCTG
CACCGGGAAA CGCTGCGCAG CTTCGGTCGT TATGAACTCA CCACCGCTTA CACCCCTGCC
GGGCAGTTAC AGCGTCAGCA CCTGAACAGC CTGCAGTATG ACCGCGATTA CACCTGGAAC
GACAACGGCG AACTCATCCG CATCAGCAGC CCGCGCCAGA CCCGGAGTTA CAGCTACAGC
ACCACCGGCA GGCTGACCGG CGTTCACACC ACCGCAGCGA ATCTGGATAT CCGCATCCCG
TATGCCACAG ACCCGGCAGG TAACCGCCTG CCCGACCCGG AGCTGCACCC GGACAGCACC
CTCAGCATGT GGCCGGATAA CCGTATCGCC CGTGACGCGC ACTATCTTTA CCGGTATGAC
CGTCACGGCA GGCTGACAGA GAAAACCGAC CTCATCCCGG AAGGGGTTAT CCGCACGGAT
GATGAGCGCA CCCACCAGTA CCATTACGAC AGTCAGCACC GGCTGGTGCA CTACACGCGG
ACACAATATG CAGAGCCGCT GGTCGAAAGT CGCTATCTTT ACGACCCGCT GGGCCGCAGG
GTGGCAAAAC GGGTATGGCG ACGTGAACGG GACCTGACGG GCTGGATGTC GCTGTCACGG
AAACCGGAAG TGACCTGGTA CGGCTGGGAC GGCGACCGGC TGACCACGAT ACAGAACGAC
AGGAGCCGCA TCCAGACGAT TTATCAGCCG GGGAGCTTCA CGCCACTCAT CAGGGTCGAA
ACTGCCACCG GTGAGCTGGC GAAAACGCAG CGCCGCAGCC TGGCGGATGC CCTTCAGCAG
TCCGGCGGCG AAGACGGTGG CAGTGTGGTG TTCCCGCCGG TGCTGGTGCA GATGCTCGAC
CGGCTGGAAA GTGAAATCCT GGCTGACCGG GTGAGTGAGG AAAGCCGCCG CTGGCTGGCA
TCGTGCGGCC TGACCGTGGA GCAGATGCAA AACCAGATGG ACCCGGTGTA CACGCCGGCG
CGAAAAATCC ACCTGTACCA CTGCGACCAT CGCGGCCTGC CGCTGGCGCT TGTCAGCACG
GAAGGGGCAA CAGAATGGTG CGCAGAATAC GATGAATGGG GCAACCTGCT GAATGAAGAG
AACCCGCATC AGCTGCAGCA GCTTATCCGC CTGCCGGGGC AGCAGTATGA TGAGGAGTCC
GGCCTGTATT ACAACCGCCA CCGCTATTAT GACCCGCTGC AGGGGCGATA TATCACTCAG
GATCCGATTG GGCTGAAAGG GGGATGGAAT TTTTATCAGT ATCCGTTGAA TCCGATCTCA
AATATAGATC CATTAGGATT AGAAACACTA AAATGCATTA AGCCACTGCA TTCAATGGGC
GGAACTGGTG AAAGAAGCGG TCCAGATATA TGGGGGAATC CGTTCTATCA TCAATATCTT
TGTGTCCCAG ATGGTAAAGG GGACTATACT TGTGGTGGCC AAGACCAACG GGGAGAATCA
AAAGGAGATG GTCTATGGGG GCCAGGTAAA GCAAGTAATG ATACAAAAGA AGCTGCTGGC
CGTTGTGACC TCGTTGAAAC CGATAATAGT TGTGTGGAGA ACTGTTTAAA AGGGAAGTTT
AAAGAGGTAA GGCCGCGTTA TTCTGTATTG CCTGATATAT TCACACCTAT AAATTTAGGG
CTATTTAAAA ACTGCCAAGA CTGGTCTAAT GATTCTTTAG AAACATGTAA GATGAAGTGC
TCCGGAAATA ACATTGGACG TTTTATTAGA TTTGTATTCA CCGGAGTGAT GTAA
|
|---|
| Protein sequence | MSGKPAARQG DMTQYGGSIV QGSAGVRIGA PTGVACSVCP GGVTSGHPVN PLLGAKVLPG
ETDIALPGPL PFILSRTYSS YRTKTPAPVG SLGPGWKMPA DIRLQLRDNT LILSDNGGRS
LYFEHLFPGE DGYSRSESLW LVRGGVAKLD EGHRLAALWQ ALPEELRLSP HRYLATNSPQ
GPWWVLGWCE RVPEADEVLP APLPPYRVLT GLVDRFGRTQ TFHHEAAGEF SGEITGVTDG
AGRHFRLVLT TQAQRAEEAR QQASSGGTEP SAFPDTLPGY TEYGRDNGIR LSAVWLTHDP
EYPENLPAAP LVRYGWTPRG ELAVVYDRSG KQVRSFTYDD KYRGRMVAHR HTGRPEIRYR
YDSDGRVTEQ LNPAGLSYTY QYEKDRITIT DSLDRREVLH TQGEAGLKRV VKKEHADGSV
TQSQFDAVGR LRTQTDAAGR TTEYSPDVVT GLITRITTPD GRASAFYYNH HSQLTSATGP
DGLEIRREYD ELGRLIQETA PDGDITRYRY DNPHSDLPCA TEDATGSRKT MTWSRYGQLL
SFTDCSGYVT RYDHDRFGQM TAVHREEGLS QYRAYDSRGQ LIAVKDTQGH ETRYEYNIAG
DLTAVIAPDG SRNGTQYDAW GKAVRTTQGG LTRSMEYDAA GRVIRLTSEN GSHTTFRYDV
LDRLIQETGF DGRTQRYHHD LTGKLIRSED EGLVTHWYYD EADRLTHRTV KGETAEQWQY
DERGWLTDIS HISEGHRVAV HYGYDSKGRL ASEHLTVHHP QTNELLWQHE TRHAYNAQGL
ANRCIPDSLP AVEWLTYGSG WLAGMKLGDT PLVDFTRDRL HRETLRSFGR YELTTAYTPA
GQLQRQHLNS LQYDRDYTWN DNGELIRISS PRQTRSYSYS TTGRLTGVHT TAANLDIRIP
YATDPAGNRL PDPELHPDST LSMWPDNRIA RDAHYLYRYD RHGRLTEKTD LIPEGVIRTD
DERTHQYHYD SQHRLVHYTR TQYAEPLVES RYLYDPLGRR VAKRVWRRER DLTGWMSLSR
KPEVTWYGWD GDRLTTIQND RSRIQTIYQP GSFTPLIRVE TATGELAKTQ RRSLADALQQ
SGGEDGGSVV FPPVLVQMLD RLESEILADR VSEESRRWLA SCGLTVEQMQ NQMDPVYTPA
RKIHLYHCDH RGLPLALVST EGATEWCAEY DEWGNLLNEE NPHQLQQLIR LPGQQYDEES
GLYYNRHRYY DPLQGRYITQ DPIGLKGGWN FYQYPLNPIS NIDPLGLETL KCIKPLHSMG
GTGERSGPDI WGNPFYHQYL CVPDGKGDYT CGGQDQRGES KGDGLWGPGK ASNDTKEAAG
RCDLVETDNS CVENCLKGKF KEVRPRYSVL PDIFTPINLG LFKNCQDWSN DSLETCKMKC
SGNNIGRFIR FVFTGVM
|
|---|
| |