| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1639 |
|---|
| Symbol | |
|---|
| ID | 6065580 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 1819885 |
|---|
| End bp | 1820862 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641601053 |
|---|
| Product | DeoR family transcriptional regulator |
|---|
| Protein accession | YP_001724623 |
|---|
| Protein GI | 170019669 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.294849 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00400864 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGA GAATGACGAA ACAGAAAAAA AACAGCCGCT GGCAGGGTTA CGATCCTCGC
TACATATACT CGCTCGTGGT CAGACGTTAT TTTGCGGATA TGAAAACCAA GATTGAGATT
GCAGAGGAGC TTGGCGTTTC CCGCTTTAAA GTTGCCAGAT TGATCGATGA GGCGATCGAA
CAGGAATACG TGAGGTTTAT CTTCCCTAAG CAGCAAGCGA TGGATGAAGA AATCGCTAAT
AATCTACGGA AAAAATTTCA TCTGGAAGAT GCAATTGTTC TTTCAGTTGC TGAATCCTGG
ACGACGCAAG AAGAACTCAA TCACAAATTG GGTGAAGTCA CCGCTGAATA TCTTATGCAA
TCTCTTCATG AAGATATGAA AGTGGGGATC GCCTGGGGAC GTGTATTATC AAGCACGGTC
AGTAAGTTGA GCAAGTTGCC TCCTTTAGAC GTTGTGCAGT TATCTGGCGT ACATCCGGGG
ATCGAGTTTA GTCAGGGGCC AATAGATCTT ATTCATAAGA TCGCTGCCAT TTCGCAGGGA
AAAGCGCACC CAATGTACGT GCCGATGTGG GTCGATGACG AAGAGCTTGC TGCCAGACTG
GCAGGTGATC CTGCGGTATT AGATACACAG CAATATTACT CACAGTTGGA TGTGGTTATC
ACCGGGATAG GTGACTGGAA ATCAGGTTCT TCAAGCTTGT GTAAAATATT TCCGGATACC
TGGTGCGAAG CTTTGTTTCA ACAAGATATC GCTGCGGATG TGTGTATCTC GTTGGTCAGC
AGGGAAGGGA AGATTCTTCA TAGTCCTATT GAACGTCTGG GATTTGGCAT TTCGACGGAT
CAACTACAAA AAGCCAAAAA AGTGATTGGT GTCGCTGGAG GAGAAGAAAA ATATGAAGGC
ATTCTTGCTT CGCTGAAATC TGGACTTTTA AATGTCTTAA TTACTGATTT TGATACGGCC
ATTAAACTTC TGGATTAA
|
|---|
| Protein sequence | MEKRMTKQKK NSRWQGYDPR YIYSLVVRRY FADMKTKIEI AEELGVSRFK VARLIDEAIE
QEYVRFIFPK QQAMDEEIAN NLRKKFHLED AIVLSVAESW TTQEELNHKL GEVTAEYLMQ
SLHEDMKVGI AWGRVLSSTV SKLSKLPPLD VVQLSGVHPG IEFSQGPIDL IHKIAAISQG
KAHPMYVPMW VDDEELAARL AGDPAVLDTQ QYYSQLDVVI TGIGDWKSGS SSLCKIFPDT
WCEALFQQDI AADVCISLVS REGKILHSPI ERLGFGISTD QLQKAKKVIG VAGGEEKYEG
ILASLKSGLL NVLITDFDTA IKLLD
|
|---|
| |