Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1565 |
Symbol | |
ID | 6067361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1731642 |
End bp | 1734719 |
Gene Length | 3078 bp |
Protein Length | 1025 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641600981 |
Product | multidrug efflux system subunit MdtC |
Protein accession | YP_001724551 |
Protein GI | 170019597 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.9011 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.896126 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGTTTT TTGCCCTCTT CATTTACCGT CCGGTGGCGA CGATTTTACT GTCGGTTGCC ATTACCCTGT GCGGCATACT GGGCTTCCGT ATGCTGCCGG TCGCCCCGCT GCCGCAGGTC GATTTTCCGG TGATTATGGT CAGCGCCTCG CTGCCCGGTG CGTCACCAGA AACAATGGCG TCTTCCGTTG CCACGCCGCT GGAGCGCTCA CTTGGGCGCA TTGCCGGAGT CAGTGAAATG ACCTCCAGCA GTTCGCTCGG CAGCACGCGT ATTATTTTGC AGTTTGATTT TGACCGGGAT ATCAACGGCG CAGCGCGTGA TGTGCAGGCG GCGATCAACG CTGCACAAAG TTTGCTGCCC AGTGGGATGC CCAGCCGCCC GACCTATCGC AAAGCGAACC CGTCGGATGC GCCAATTATG ATCCTCACGC TGACGTCCGA TACTTATTCG CAGGGTGAAC TGTACGATTT CGCCTCGACG CAGCTGGCTC CGACGATTTC GCAAATCGAC GGTGTTGGTG ATGTCGATGT CGGAGGCAGC TCACTGCCCG CCGTACGCGT CGGGCTGAAT CCGCAGGCGC TGTTTAATCA GGGCGTGTCG CTGGACGACG TACGCACCGC CGTCAGCAAT GCCAACGTGC GTAAACCGCA GGGCGCGCTG GAAGATGGCA CTCACCGCTG GCAGATCCAG ACCAATGATG AGCTAAAAAC CGCCGCTGAA TATCAGCCGT TGATTATTCA CTACAACAAC GGCGGCGCGG TTCGTCTGGG CGATGTGGCG ACGGTGACCG ACTCAGTGCA GGATGTGCGC AACGCCGGGA TGACCAACGC CAAACCGGCT ATTTTACTGA TGATCCGCAA ACTGCCGGAA GCCAATATTA TCCAGACGGT TGACAGCATC CGGGCAAAAT TACCGGAGTT GCAGGAAACC ATTCCGGCGG CGATTGATCT GCAAATTGCC CAGGATCGCT CCCCCACCAT TCGCGCCTCG CTGGAAGAAG TCGAGCAAAC GCTGATTATC TCGGTGGCGC TGGTGATTCT GGTGGTGTTT TTATTCCTGC GCTCGGGTCG CGCCACTATT ATTCCCGCCG TTTCGGTGCC GGTTTCGCTG ATTGGTACGT TTGCGGCGAT GTACCTGTGC GGATTCAGTC TCAATAACCT TTCGTTAATG GCGCTCACCA TCGCTACTGG TTTCGTGGTG GATGACGCCA TCGTGGTGCT GGAAAACATT GCACGTCATC TGGAAGCGGG AATGAAACCG TTGCAAGCCG CACTGCAAGG TACTCGCGAA GTCGGTTTTA CGGTGCTGTC GATGAGTCTG TCACTGGTGG CGGTGTTCCT GCCGCTGCTG TTGATGGGCG GATTGCCGGG CCGACTGTTA CGCGAATTTG CCGTGACGCT TTCTGTCGCC ATTGGTATAT CGTTGCTGGT TTCTCTGACA TTAACGCCAA TGATGTGTGG CTGGATGCTG AAAGCCAGCA AGCCGCGCGA GCAAAAGCGA CTGCGTGGTT TTGGTCGCAT GTTGGTAGCC CTGCAACAAG GCTACGGCAA GTCACTGAAA TGGGTGCTCA ATCATACCCG TCTGGTGGGC GTGGTGCTGC TTGGCACCAT TGCGCTGAAT ATCTGGCTGT ATATCTCGAT CCCGAAAACC TTCTTCCCGG AGCAGGACAC TGGCGTGTTG ATGGGCGGGA TTCAGGCGGA TCAGAGTATT TCGTTTCAGG CGATGCGCGG TAAGTTGCAG GATTTCATGA AAATTATCCG TGACGATCCG GCAGTGGATA ATGTCACCGG CTTTACAGGC GGTTCGCGAG TGAACAGCGG GATGATGTTT ATCACCCTCA AGCCACGCGA CGAACGCAGC GAAACGGCGC AGCAAATTAT CGACCGTCTG CGCGTAAAAC TGGCGAAAGA ACCGGGGGCG AATCTGTTCC TGATGGCGGT ACAGGATATT CGCGTTGGTG GGCGTCAGTC GAACGCCAGC TACCAGTACA CGTTGTTATC CGACGACCTG GCGGCACTGC GAGAATGGGA GCCGAAAATC CGCAAAAAAC TGGCGACGTT GCCGGAACTG GCGGACGTGA ACTCCGATCA GCAGGATAAC GGCGCGGAGA TGAATCTGGT TTACGACCGC GACACCATGG CACGGCTGGG AATCGACGTA CAAGCCGCCA ACAGTCTGTT AAATAACGCC TTCGGTCAGC GGCAAATCTC GACCATTTAC CAGCCGATGA ACCAGTATAA AGTGGTGATG GAAGTGGATC CGCGCTATAC CCAGGACATC AGTGCGCTGG AAAAAATGTT CGTTATCAAT AACGAAGGCA AAGCGATCCC GCTGTCGTAT TTCGCTAAAT GGCAACCGGC GAATGCCCCA CTATCGGTGA ATCATCAGGG ATTATCGGCG GCCTCGACCA TTTCGTTTAA CCTGCCGACC GGAAAATCGC TCTCGGACGC CAGTGCGGCG ATCGATCGCG CAATGACCCA GCTTGGTGTG CCTTCGACGG TGCGCGGCAG TTTTGCCGGC ACGGCGCAGG TGTTCCAGGA GACGATGAAC TCGCAGGTGA TCCTGATTAT CGCCGCCATC GCCACGGTGT ATATCGTGCT GGGTATCCTT TACGAGAGTT ACGTACATCC GCTGACGATT CTCTCCACCC TGCCCTCGGC GGGCGTTGGA GCGCTGTTGG CGCTGGAGCT GTTCAATGCC CCGTTCAGCC TAATCGCCCT GATAGGGATC ATGCTATTAA TCGGCATCGT GAAGAAAAAC GCCATTATGA TGGTCGATTT TGCGCTTGAA GCCCAACGGC ACGGTAACCT GACGCCGCAG GAAGCTATTT TCCAGGCCTG TCTGCTGCGT TTTCGCCCGA TTATGATGAC TACCCTGGCG GCGCTGTTTG GTGCGCTGCC GCTGGTATTG TCGGGCGGCG ACGGCTCGGA GCTGCGGCAA CCCCTGGGGA TCACCATTGT CGGCGGACTG GTAATGAGCC AGCTCCTTAC GCTGTATACC ACGCCGGTGG TGTATCTCTT TTTCGACCGT CTGCGGCTGC GTTTTTCGCG TAAACCTAAA CAAACGGTAA CCGAGTAA
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Protein sequence | MKFFALFIYR PVATILLSVA ITLCGILGFR MLPVAPLPQV DFPVIMVSAS LPGASPETMA SSVATPLERS LGRIAGVSEM TSSSSLGSTR IILQFDFDRD INGAARDVQA AINAAQSLLP SGMPSRPTYR KANPSDAPIM ILTLTSDTYS QGELYDFAST QLAPTISQID GVGDVDVGGS SLPAVRVGLN PQALFNQGVS LDDVRTAVSN ANVRKPQGAL EDGTHRWQIQ TNDELKTAAE YQPLIIHYNN GGAVRLGDVA TVTDSVQDVR NAGMTNAKPA ILLMIRKLPE ANIIQTVDSI RAKLPELQET IPAAIDLQIA QDRSPTIRAS LEEVEQTLII SVALVILVVF LFLRSGRATI IPAVSVPVSL IGTFAAMYLC GFSLNNLSLM ALTIATGFVV DDAIVVLENI ARHLEAGMKP LQAALQGTRE VGFTVLSMSL SLVAVFLPLL LMGGLPGRLL REFAVTLSVA IGISLLVSLT LTPMMCGWML KASKPREQKR LRGFGRMLVA LQQGYGKSLK WVLNHTRLVG VVLLGTIALN IWLYISIPKT FFPEQDTGVL MGGIQADQSI SFQAMRGKLQ DFMKIIRDDP AVDNVTGFTG GSRVNSGMMF ITLKPRDERS ETAQQIIDRL RVKLAKEPGA NLFLMAVQDI RVGGRQSNAS YQYTLLSDDL AALREWEPKI RKKLATLPEL ADVNSDQQDN GAEMNLVYDR DTMARLGIDV QAANSLLNNA FGQRQISTIY QPMNQYKVVM EVDPRYTQDI SALEKMFVIN NEGKAIPLSY FAKWQPANAP LSVNHQGLSA ASTISFNLPT GKSLSDASAA IDRAMTQLGV PSTVRGSFAG TAQVFQETMN SQVILIIAAI ATVYIVLGIL YESYVHPLTI LSTLPSAGVG ALLALELFNA PFSLIALIGI MLLIGIVKKN AIMMVDFALE AQRHGNLTPQ EAIFQACLLR FRPIMMTTLA ALFGALPLVL SGGDGSELRQ PLGITIVGGL VMSQLLTLYT TPVVYLFFDR LRLRFSRKPK QTVTE
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