| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1086 |
|---|
| Symbol | |
|---|
| ID | 6065472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1176029 |
|---|
| End bp | 1176766 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641600498 |
|---|
| Product | outer membrane protein assembly complex subunit YfiO |
|---|
| Protein accession | YP_001724080 |
|---|
| Protein GI | 170019126 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.403898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000281733 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGCA TGAAATATCT GGTGGCAGCC GCCACACTAA GCCTGTTTTT GGCGGGTTGC
TCGGGGTCAA AGGAAGAAGT ACCTGATAAT CCGCCAAATG AAATTTACGC GACTGCACAA
CAAAAGCTGC AGGACGGTAA CTGGAGACAG GCAATAACGC AACTGGAAGC GTTAGATAAT
CGCTATCCGT TTGGTCCGTA TTCGCAGCAG GTGCAGCTGG ATCTCATCTA CGCCTACTAT
AAAAACGCCG ATTTGCCGTT AGCACAGGCT GCCATCGATC GTTTTATTCG CCTTAACCCG
ACCCATCCGA ATATCGATTA TGTCATGTAC ATGCGTGGCC TGACCAATAT GGCGCTGGAT
GACAGTGCGC TGCAAGGGTT CTTTGGCGTC GATCGTAGCG ATCGCGATCC TCAACATGCA
CGAGCTGCGT TTAGTGACTT TTCCAAACTG GTGCGCGGCT ATCCGAACAG TCAGTACACC
ACCGATGCCA CCAAACGTCT GGTATTCCTG AAAGATCGTC TGGCGAAATA TGAATACTCC
GTGGCCGAGT ACTATACAGA ACGTGGCGCA TGGGTTGCCG TCGTTAACCG CGTAGAAGGC
ATGTTGCGCG ACTACCCGGA TACCCAGGCT ACGCGTGATG CGCTGCCGCT GATGGAAAAT
GCATACCGTC AGATGCAGAT GAATGCGCAA GCTGAAAAAG TAGCGAAAAT CATCGCCGCA
AACAGCAGCA ATACATAA
|
|---|
| Protein sequence | MTRMKYLVAA ATLSLFLAGC SGSKEEVPDN PPNEIYATAQ QKLQDGNWRQ AITQLEALDN
RYPFGPYSQQ VQLDLIYAYY KNADLPLAQA AIDRFIRLNP THPNIDYVMY MRGLTNMALD
DSALQGFFGV DRSDRDPQHA RAAFSDFSKL VRGYPNSQYT TDATKRLVFL KDRLAKYEYS
VAEYYTERGA WVAVVNRVEG MLRDYPDTQA TRDALPLMEN AYRQMQMNAQ AEKVAKIIAA
NSSNT
|
|---|
| |