Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_1079 |
Symbol | |
ID | 6065565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | - |
Start bp | 1169295 |
End bp | 1170521 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641600491 |
Product | hypothetical protein |
Protein accession | YP_001724073 |
Protein GI | 170019119 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.217552 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00135165 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATGGATA ACGATAATTC TCTTAATAAG CGCCCCACGT TTAAAAGAGC ATTACGCAAC ATCAGTATCA CCAGCATATT TATCACTATG ATGCTGATCT GGTTGCTGCT TTCCGTGACC TCGGTGCTGA CCCTGAAACA GTACGCGCAA AAAAACCTGG CACTGACAGC AGCAACAATG ACTTACAGTC TGGAAGCAGC TGTCGTTTTT GCCGATGGCC CTGCAGCAAC TGAAACACTG GCAGCGCTGG GCCAGCAAGG GCAATTTTCA ACTGCAGAAG TACGTGATAA GCAGCAAAAT ATTCTGGCGT CCTGGCATTA CACCCGTAAG GATCCAGGCG ATACTTTCAG CAATTTCATA AGCCACTGGC TCTTCCCCGC CCCCATCATT CAGCCGATTC GTCACAATGG TGAAACCATT GGCGAAGTAC GCTTAACCGC TCGCGACAGT TCAATCAGCC ATTTTATCTG GTTTTCGCTC GCCGTACTGA CCGGTTGTAT TCTGCTGGCA TCAGGCATCG CAATTACCCT CACCCGCCAT TTGCACAATG GCCTGGTGGA AGCACTGAAA AATATCACCG ATGTCGTACA TGATGTGCGT TCCAACCGCA ATTTTTCCCG ACGAGTTTCG GAAGAACGTA TCGCTGAGTT TCACCGCTTC GCTCTCGACT TCAACAGTCT GCTGGATGAA ATGGAAGAGT GGCAGCTTCG TTTACAGGCT AAAAATGCGC AGCTTCTACG TACCGCGCTA CATGACCCAT TAACCGGGCT GGCTAACCGC GCAGCGTTTC GTAGCGGCAT CAACACGTTG ATGAACAATT CCGATGCCCG AAAAACGTCG GCGTTACTAT TTCTTGATGG CGATAATTTC AAATACATCA ATGATACCTG GGGTCATGCG ACGGGCGATA GAGTCTTGAT TGAAATCGCA AAACGGTTAG CTGAAGTTGG CGGGCTGCGA CATAAAGCAT ACCGCCTGGG CGGCGATGAA TTCGCTATGG TGCTCTATGA TGTACAGTCA GAATCTGAAG TGCAGCAGAT ATGCTCAGCA CTGACACAAA TCTTTAATCT CCCGTTTGAT CTTCATAATG GTCATCAGAC CACCATGACA TTAAGCATTG GTTACGCGAT GACCATTGAG CACGCCTCTG CGGAAAAATT ACAAGAGCTT GCCGATCACA ATATGTATCA GGCCAAACAC CAGCGTGCCG AAAAGCTGGT GAGATAA
|
Protein sequence | MMDNDNSLNK RPTFKRALRN ISITSIFITM MLIWLLLSVT SVLTLKQYAQ KNLALTAATM TYSLEAAVVF ADGPAATETL AALGQQGQFS TAEVRDKQQN ILASWHYTRK DPGDTFSNFI SHWLFPAPII QPIRHNGETI GEVRLTARDS SISHFIWFSL AVLTGCILLA SGIAITLTRH LHNGLVEALK NITDVVHDVR SNRNFSRRVS EERIAEFHRF ALDFNSLLDE MEEWQLRLQA KNAQLLRTAL HDPLTGLANR AAFRSGINTL MNNSDARKTS ALLFLDGDNF KYINDTWGHA TGDRVLIEIA KRLAEVGGLR HKAYRLGGDE FAMVLYDVQS ESEVQQICSA LTQIFNLPFD LHNGHQTTMT LSIGYAMTIE HASAEKLQEL ADHNMYQAKH QRAEKLVR
|
| |