| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_1005 |
|---|
| Symbol | srlR |
|---|
| ID | 6067617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | - |
|---|
| Start bp | 1094242 |
|---|
| End bp | 1095015 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641600413 |
|---|
| Product | DNA-bindng transcriptional repressor SrlR |
|---|
| Protein accession | YP_001724001 |
|---|
| Protein GI | 170019047 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0173868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000410448 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTC GTCAGCGTCA GGCCGCCATT CTGGAGTATC TGCAAAAGCA GGGTAAATGC
TCGGTTGAAG AATTGGCGCA ATACTTTGAC ACCACAGGCA CAACCATTCG CAAAGATCTG
GTCATTCTGG AACATGCAGG AACCGTCATT CGTACTTATG GCGGAGTGGT GTTGAATAAA
GAGGAATCCG ATCCGCCTAT CGATCATAAA ACACTCATCA ACACCCACAA GAAAGAGCTG
ATTGCAGAAG CTGCCGTTAG TTTTATTCAT GATGGCGACT CAATAATTCT GGATGCTGGC
AGTACCGTTT TGCAGATGGT GCCCCTGCTC TCGCGCTTTA ATAACATCAC GGTGATGACC
AACAGCCTGC ATATCGTCAA TGCGCTATCC GAACTGGATA ACGAACAAAC TATCCTGATG
CCAGGCGGAA CATTTCGTAA AAAATCGGCC TCATTTCACG GGCAGCTGGC AGAGAATGCC
TTCGAGCATT TCACCTTCGA TAAATTGTTT ATGGGCACCG ACGGCATCGA TCTCAATGCG
GGCGTAACCA CCTTCAACGA GGTCTATACC GTCAGTAAGG CGATGTGTAA TGCCGCGCGC
GAAGTGATTT TGATGGCGGA CTCATCAAAG TTTGGCCGTA AAAGCCCCAA CGTAGTTTGC
AGTCTTGAAA GCGTCGATAA GCTGATTACC GACGCAGGTA TCGATCCGGC GTTTCGTCAG
GCGCTGGAAG AGAAAGGGAT CGATGTGATC ATAACCGGAG AGAGCAATGA GTGA
|
|---|
| Protein sequence | MKPRQRQAAI LEYLQKQGKC SVEELAQYFD TTGTTIRKDL VILEHAGTVI RTYGGVVLNK
EESDPPIDHK TLINTHKKEL IAEAAVSFIH DGDSIILDAG STVLQMVPLL SRFNNITVMT
NSLHIVNALS ELDNEQTILM PGGTFRKKSA SFHGQLAENA FEHFTFDKLF MGTDGIDLNA
GVTTFNEVYT VSKAMCNAAR EVILMADSSK FGRKSPNVVC SLESVDKLIT DAGIDPAFRQ
ALEEKGIDVI ITGESNE
|
|---|
| |