| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0975 |
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| Symbol | |
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| ID | 6067922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli ATCC 8739 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010468 |
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| Strand | - |
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| Start bp | 1060288 |
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| End bp | 1061550 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641600383 |
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| Product | type III effector Hrp-dependent outers |
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| Protein accession | YP_001723971 |
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| Protein GI | 170019017 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01586] cysteine protease domain, YopT-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.847022 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.745569 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAAGA TTGGCGTTAT CGCCGATGAT TTTACCGGCG CGACGGATAT CGCCAGTTTT
CTGGTGGAAA ACGGTCTACC AACGGTACAA ATTAACGGTG TTCCAACAGG TAAAATGCCG
GAAGCAATCG ACGCACTGGT GATCAGCCTG AAAACGCGCT CCTGTCCAGT GGTTGAAGCC
ACACAGCAAT CGCTGGCGGC TCTGAGCTGG TTGCAACAGC AAGGTTGCAA ACAGATCTAT
TTCAAATACT GCTCTACTTT CGACAGTACG GCGAAAGGTA ATATTGGCCC GGTTACCGAT
GCCTTAATGG ATGCTCTCGA CACGCCGTTT ACGGTCTTCT CTCCGGCCCT GCCGGTCAAC
GGACGTACGG TTTATCAGGG GTATTTGTTC GTAATGAATC AACTGCTGGC CGAATCCGGG
ATGCGCCATC ACCCGGTAAA TCCCATGACC GACAGCTATC TTCCCCGTCT GGTTGAAGCG
CAATCCACAG GGCGCTGCGG CGTCGTTTCG GCACATGTTT TCGAACAAGG TGTGGATGCC
GTTCGTCAAG AGCTGGCTCG CTTACAGCAA GAGGGCTACC GCTACGCGGT GCTTGATGCG
CTGACCGAAC ACCATCTGGA AATTCAGGGA GAAGCCTTGC GCGATGCCCC ACTGGTAACG
GGCGGTTCTG GTCTGGCGAT TGGCCTGGCC CGGCAGTGGG CGCAAGAAAA CGGTAACCAG
GCTCGCAAAG CAGGGCGTCC GCTCGCTGGG CGCGGCGTAG TGCTCTCCGG TTCATGCTCT
CAAATGACCA ACCGCCAGGT AGCACATTAC CGTCAAATTG CACCAGCCCG TGAAGTTGAT
GTGGCACGCT GCCTCTCAAT TGAAACTCTG GCCGCTTATG CACACGAACT GGCAGAGTGG
GTTCTGGGCC AGGAAAGTGT ACTTGCTCCA CTGGTTTTTG CCACCGCCAG CACTGACGCA
TTGGCAGCAA TTCAACAGCA ATACGGTGCA CAAAAAGCCA GTCAGGCAGT AGAAACACTG
TTTTCTCAAC TAGCGGCGCG GTTAGCAGCG GAAGGCGTGA CACGCTTTAT TGTCGCAGGC
GGTGAGACCT CCGGCGTAGT CACACAGAGC CTGGGAATAA AAGGGTTTCA TATTGGCCCA
ACCATTTCCC CCGGCGTGCC GTGGGTAAAC GCACTGGATA AGCCTGTCTC ACTCGCCCTT
AAATCTGGCA ACTTCGGTGA TGACGCCTTT TTTTCACGAG CCCAAAGAGA GTTTTTATCA
TGA
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| Protein sequence | MIKIGVIADD FTGATDIASF LVENGLPTVQ INGVPTGKMP EAIDALVISL KTRSCPVVEA
TQQSLAALSW LQQQGCKQIY FKYCSTFDST AKGNIGPVTD ALMDALDTPF TVFSPALPVN
GRTVYQGYLF VMNQLLAESG MRHHPVNPMT DSYLPRLVEA QSTGRCGVVS AHVFEQGVDA
VRQELARLQQ EGYRYAVLDA LTEHHLEIQG EALRDAPLVT GGSGLAIGLA RQWAQENGNQ
ARKAGRPLAG RGVVLSGSCS QMTNRQVAHY RQIAPAREVD VARCLSIETL AAYAHELAEW
VLGQESVLAP LVFATASTDA LAAIQQQYGA QKASQAVETL FSQLAARLAA EGVTRFIVAG
GETSGVVTQS LGIKGFHIGP TISPGVPWVN ALDKPVSLAL KSGNFGDDAF FSRAQREFLS
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