Gene EcolC_0967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcolC_0967 
SymboltruD 
ID6068181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli ATCC 8739 
KingdomBacteria 
Replicon accessionNC_010468 
Strand
Start bp1052580 
End bp1053629 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content52% 
IMG OID641600375 
ProducttRNA pseudouridine synthase D 
Protein accessionYP_001723963 
Protein GI170019009 
COG category[S] Function unknown 
COG ID[COG0585] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00094] tRNA pseudouridine synthase, TruD family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.77182 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGAGT TTGATAATCT CACTTACCTC CACGGTAAAC CGCAAGGCAC CGGGCTGCTG 
AAAGCCAATC CGGAAGACTT TGTGGTGGTG GAAGATTTGG GCTTTGAGCC TGATGGTGAA
GGTGAGCATA TTCTGGTTAG AATCCTCAAA AACGGCTGCA ATACCCGTTT TGTGGCGGAT
GCACTGGCGA AATTCCTGAA AATTCATGCC CGTGAAGTCA GCTTCGCTGG GCAAAAAGAC
AAACATGCTG TTACGGAACA GTGGTTATGC GCTCGCGTGC CGGGCAAGGA AATGCCCGAT
CTGAGCGCCT TTCAACTGGA AGGCTGCCAG GTGCTGGAGT ATGCGCGGCA CAAGCGCAAG
CTGCGTTTAG GGGCGCTGAA AGGAAACGCC TTTACCCTGG TTCTGCGCGA AGTGAGCAAT
CGCGATGACG TTGAACAACG TCTGAACGAT ATTTGCGTAA AAGGTGTACC GAACTACTTC
GGTGCCCAAC GTTTTGGGAT TGGCGGTAGC AACTTGCAGG GGGCGCAGCG CTGGGCGCAA
ACCAATACTC CGGTGCGCGA TCGCAATAAA CGGAGTTTTT GGTTGTCGGC AGCCCGCAGT
GCGTTGTTTA ATCAGATTGT TGCTGAGCGC CTCAAAAAAG CAGACGTTAA TCAAGTTGTT
GACGGCGATG CGCTACAATT AGCCGGACGT GGTAGCTGGT TTGTCGCAAC CACCGAAGAA
CTGGCGGAAT TACAGCGTCG CGTTAACGAT AAAGAGCTGA TGATAACCGC CGCATTGCCG
GGCAGTGGCG AATGGGGAAC TCAGCGTGAA GCGCTGGCAT TCGAACAAGC AGCTGTCGCC
GCAGAAACTG AATTACAAGC TTTACTGGTG CGCGAAAAAG TTGAAGCCGC GCGCAGAGCG
ATGCTGCTGT ATCCGCAACA ATTAAGCTGG AATTGGTGGG ATGACGTCAC CGTAGAGATC
CGTTTCTGGC TTCCGGCGGG TAGTTTTGCA ACCAGCGTTG TCAGGGAACT TATCAACACA
ACAGGTGATT ATGCGCATAT TGCTGAGTAA
 
Protein sequence
MIEFDNLTYL HGKPQGTGLL KANPEDFVVV EDLGFEPDGE GEHILVRILK NGCNTRFVAD 
ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD LSAFQLEGCQ VLEYARHKRK
LRLGALKGNA FTLVLREVSN RDDVEQRLND ICVKGVPNYF GAQRFGIGGS NLQGAQRWAQ
TNTPVRDRNK RSFWLSAARS ALFNQIVAER LKKADVNQVV DGDALQLAGR GSWFVATTEE
LAELQRRVND KELMITAALP GSGEWGTQRE ALAFEQAAVA AETELQALLV REKVEAARRA
MLLYPQQLSW NWWDDVTVEI RFWLPAGSFA TSVVRELINT TGDYAHIAE