Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcolC_0848 |
Symbol | |
ID | 6067644 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli ATCC 8739 |
Kingdom | Bacteria |
Replicon accession | NC_010468 |
Strand | + |
Start bp | 917613 |
End bp | 918380 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 641600254 |
Product | type III secretion protein SpaR/YscT/HrcT |
Protein accession | YP_001723847 |
Protein GI | 170018893 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4791] Type III secretory pathway, component EscT |
TIGRFAM ID | [TIGR01401] type III secretion protein SpaR/YscT/HrcT |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.669729 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGGAGG CGATACTCTA TCAGTTGCAT AGTCTGCTGG CTGCTACAGC GCTCGGTTTT TGCCGATTGG CACCAACTTT CTATTTGTTA CCATTTTTCG CCAGTGGGAA TATACCAACA GTAGTCCGTC ATCCAATAAT AATAGTGGTA TCATGTGCAT TAGTTCAGCA TTACCACTAT GAATTATCGA CCTTAAATGA AATCGATATC GCTTTGTTTG CTGCCAGAGA AATTATCATA GGGCTGTTCA TTGCTTGCTT ATTATCATCC CCGTTTTGGA TTTTCCTTGC TATAGGTAGT TTTATCGATA ACCAACGTGG TGCAACGTTA AGTAGTACTT TGGATCCTGC TACAGGTGTC GATACTTCGG AATTAGCAAG ATTATTTAAT CTATTCTCTG CAGCGGTTTA TCTTACTAAC GGTGGATTGA ACTTTATTCT GGAAACTCTT TGGCAAAGTT ATAATTTATG GCCTTCAGGC AATTTTAATT TTCCTAAATT AGAGCCTTTA TTCTCATATA TTAATAACAT AATGACTCAT ACTATCGTTT ACGCAAGTCC CGTGATTGCC GTTATGCTGG GCGGTGAGGC TGTCCTGGGA TTGCTGGCAC GTTATGCTTC ACAACTAAAT GCTTTTGCCA TTTCACTGAC TGTCAAAAGT GCGCTGGCAT TTTTAATATT AATTATTTAT TTTGGCCCAA TACTGGCTGA ACGAGTAATG CCGTTATCCT TTTTCCCAGA ACAATTGCAA CTATACATTG AGAAATAG
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Protein sequence | MGEAILYQLH SLLAATALGF CRLAPTFYLL PFFASGNIPT VVRHPIIIVV SCALVQHYHY ELSTLNEIDI ALFAAREIII GLFIACLLSS PFWIFLAIGS FIDNQRGATL SSTLDPATGV DTSELARLFN LFSAAVYLTN GGLNFILETL WQSYNLWPSG NFNFPKLEPL FSYINNIMTH TIVYASPVIA VMLGGEAVLG LLARYASQLN AFAISLTVKS ALAFLILIIY FGPILAERVM PLSFFPEQLQ LYIEK
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