| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcolC_0281 |
|---|
| Symbol | |
|---|
| ID | 6065822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli ATCC 8739 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010468 |
|---|
| Strand | + |
|---|
| Start bp | 320839 |
|---|
| End bp | 322812 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641599680 |
|---|
| Product | glycogen debranching enzyme |
|---|
| Protein accession | YP_001723286 |
|---|
| Protein GI | 170018332 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00281975 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAC TCGCCATTGG CAAACCCGCT CCCCTCGGCG CGCATTACGA CGGTCAGGGC
GTCAACTTCA CACTTTTCTC CGTTCATGCC GAGCGGGTAG AACTGTGTGT CTTTGACGCC
AATGGCCAGG AACATCGCTA TGACTTGCCA GGGCACAGTG GCGACATTTG GCACGGTTAT
CTGCCGGATG CGCGCCCGGG TTTGCGTTAT GGTTATCGCG TTCATGGCCC CTGGCAACCC
GCCGAGGGGC ATCGCTTTAA CCCGGCGAAG TTGTTGATTG ATCCTTGCGC GCGGCAAATT
GACGGGGAGT TTAAAGATAA CCCGCTGCTG CACGCCGGTC ATAATGAACC TGACTATCGC
GACAACGCCG CCATTGCGCC GAAATGCGTA GTGGTGGTTG ATCACTATGA CTGGGAAGAT
GATGCCCCGC CGCGCACGCC GTGGGGCAGC ACCATCATTT ATGAAGCCCA TGTCAAAGGA
TTAACGTACT TGCACCCGGA GATCCCGGTC GAGATCCGTG GCACTTATAA AGCCCTCGGG
CATCCGGTGA TGATCAACTA TTTGAAACAA TTGGGCATTA CCGCGCTGGA ACTGCTGCCA
GTGGCGCAGT TTGCCAGTGA ACCACGTCTG CAACGCATGG GGCTAAGTAA CTACTGGGGT
TACAACCCGG TGGCGATGTT TGCGCTGCAT CCGGCGTATG CCTGCTCGCC AGAAACGGCG
CTGGATGAGT TTCGCGATGC AATCAAAGCA CTGCATAAAG CGGGTATCGA AGTCATTCTT
GATATCGTGC TCAACCATAG TGCGGAACTG GACCTCGACG GCCCGTTATT CTCGCTGCGT
GGGATCGATA ACCGTAGCTA TTATTGGATA AGAGAAGACG GCGATTATCA CAACTGGACC
GGTTGCGGCA ACACGCTCAA TTTGAGTCAT CCGGCGGTGG TGGATTATGC CAGCGCCTGC
CTGCGTTATT GGGTAGAAAC CTGCCACGTC GATGGTTTCC GCTTTGATCT GGCGGCAGTC
ATGGGCCGTA CGCCAGAGTT CCGTCAGGAT GCGCCGTTGT TTACCGCTAT CCAGAACTGC
CCGGTGCTCT CGCAGGTGAA GTTAATTGCT GAACCGTGGG ATATCGCTCC TGGTGGTTAT
CAGGTGGGAA ATTTCCCGCC GCTGTTTGCC GAGTGGAACG ATCATTTCCG CGATGCTGCC
CGTCGTTTCT GGCTGCATTA TGATTTGCCT CTGGGGGCGT TTGCCGGGCG TTTTGCTGCC
TCCAGCGATG TTTTTAAACG TAATGGTCGT CTGCCGAGTG CCGCGATTAA TCTCGTCACC
GCACATGACG GTTTTACGCT TCGCGACTGC GTTTGCTTCA ACCATAAACA CAATGAAGCA
AACGGAGAAG AAAATCGCGA CGGGACCAAC AACAATTACA GTAACAATCA TGGTAAAGAA
GGGTTAGGCG GTACTCTTGA TCTGGTTGAA CGGCGGCGCG ACAGCATTCA TGCCCTGTTA
ACAACGTTGT TGCTCTCCCA GGGCACGCCG ATGTTACTGG CCGGTGACGA ACATGGTCAC
AGCCAGCATG GCAATAACAA TGCCTACTGT CAGGATAACC AATTAACCTG GTTGGACTGG
TCGCAGGCAA GCAGTGGTTT AACCGCATTT ACCGCCGCGT TAATCCATCT GCGCAAGCGT
ATTCCCGCTT TGGTGGAGAA TCGCTGGTGG GAAGAAGGCG ACGGCAATGT CCGTTGGCTA
AATCGATATG CTCAACCTTT AAGCACGGAT GAGTGGCAAA ACGGGCCGAA ACAGCTGCAA
ATTCTGCTCT CGGATCGCTT TTTGATCGCA ATTAACGCCA CGCTTGAGGT AACAGAGATT
GTTTTACCTG CTGGGGAGTG GCACGCCATT CCCCCATTCG CTGGAGAGGA TAACCCAGTG
ATTACGGCTG TCTGGCAGGG ACCTGCACAC GGATTGTGTG TGTTCCAGAG ATGA
|
|---|
| Protein sequence | MTQLAIGKPA PLGAHYDGQG VNFTLFSVHA ERVELCVFDA NGQEHRYDLP GHSGDIWHGY
LPDARPGLRY GYRVHGPWQP AEGHRFNPAK LLIDPCARQI DGEFKDNPLL HAGHNEPDYR
DNAAIAPKCV VVVDHYDWED DAPPRTPWGS TIIYEAHVKG LTYLHPEIPV EIRGTYKALG
HPVMINYLKQ LGITALELLP VAQFASEPRL QRMGLSNYWG YNPVAMFALH PAYACSPETA
LDEFRDAIKA LHKAGIEVIL DIVLNHSAEL DLDGPLFSLR GIDNRSYYWI REDGDYHNWT
GCGNTLNLSH PAVVDYASAC LRYWVETCHV DGFRFDLAAV MGRTPEFRQD APLFTAIQNC
PVLSQVKLIA EPWDIAPGGY QVGNFPPLFA EWNDHFRDAA RRFWLHYDLP LGAFAGRFAA
SSDVFKRNGR LPSAAINLVT AHDGFTLRDC VCFNHKHNEA NGEENRDGTN NNYSNNHGKE
GLGGTLDLVE RRRDSIHALL TTLLLSQGTP MLLAGDEHGH SQHGNNNAYC QDNQLTWLDW
SQASSGLTAF TAALIHLRKR IPALVENRWW EEGDGNVRWL NRYAQPLSTD EWQNGPKQLQ
ILLSDRFLIA INATLEVTEI VLPAGEWHAI PPFAGEDNPV ITAVWQGPAH GLCVFQR
|
|---|
| |