Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_A0111 |
Symbol | cma |
ID | 6106457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010488 |
Strand | + |
Start bp | 82865 |
End bp | 83680 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641614853 |
Product | colicin-M |
Protein accession | YP_001739994 |
Protein GI | 170650908 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 0.78894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00593759 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAACCT TAACTGTTCA TGCACCATCA CCATCAACTA ACTTACCAAG TTATGGCAAT GGTGCATTTT CTCTTTCAGC ACCGCATGTT CCTGGTGCTG GACCTCTTTT AGTCCAGGTT GTTTATAGTT TTTTCCAGAG TCCAAACATG TGTCTTCAGG CTTTAACTCA ACTTGAGGAT TACATCAAAA AACATGGGGC TAGCAACCCT CTCACATTGC AGATCATATC GACAAATATT GGTTACTTCT GTAACGCCGA CCGAAATCTG GTTCTTCACC CTAGAATAAG CGTTTATGAC GCTTACCACT TCTCAAAACC AGCGCCAAGT CAATATGACT ATCGCTCAAT GAATATGAAA CAAATGAGCG GTAATGTCAC TACACCAATT GTGGCGCTTG CTCACTATTT ATGGGGTAAT GGCGCTGAAA GGAGCGTTAA TATCGCCAAC ATTGGTCTTA AAATTTCCCC TATGAAAATT AATCAGATAA AAGACATTAT AAAATCTGGT GTAGTAGGTA CATTCCCTGT TTCTACAAAG TTCACACATG CCACTGGTGA TTATAATGTT ATTACCGGTG CATATCTTGG TAATATCACA CTGAAAACAG AAGGTACTTT AACTATCTCT GCCAATGGCT CCTGGACTTA CAATGGCGTT GTTCGTTCAT ATGATGATAA ATACGATTTT AACGCCAGCA CTCACCGTGG CGTCATCGGA GAGTCGCTCA CAAGGCTCGG GGCGATGTTT TCTGGTAAAG AGTACCAGAT ACTGCTTCCT GGTGAAATTC ACATTAAAGA AAGTGGTAAG CGATAA
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Protein sequence | METLTVHAPS PSTNLPSYGN GAFSLSAPHV PGAGPLLVQV VYSFFQSPNM CLQALTQLED YIKKHGASNP LTLQIISTNI GYFCNADRNL VLHPRISVYD AYHFSKPAPS QYDYRSMNMK QMSGNVTTPI VALAHYLWGN GAERSVNIAN IGLKISPMKI NQIKDIIKSG VVGTFPVSTK FTHATGDYNV ITGAYLGNIT LKTEGTLTIS ANGSWTYNGV VRSYDDKYDF NASTHRGVIG ESLTRLGAMF SGKEYQILLP GEIHIKESGK R
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