| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4194 |
|---|
| Symbol | |
|---|
| ID | 6147246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 4292387 |
|---|
| End bp | 4293286 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641619017 |
|---|
| Product | 10 TMS drug/metabolite exporter (DME) family protein |
|---|
| Protein accession | YP_001746145 |
|---|
| Protein GI | 170682387 |
|---|
| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0697] Permeases of the drug/metabolite transporter (DMT) superfamily |
|---|
| TIGRFAM ID | [TIGR00950] Carboxylate/Amino Acid/Amine Transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.00209407 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCTAC TTATCATCAC CACGATTCTG TGGGCCTTCT CCTTTAGCTT TTATGGCGAG
TACCTTGCGG GGCACGTCGA TAGCTATTTT GCGGTGCTGG TGCGCGTTGG CCTGGCGGCA
CTCGTTTTTC TGCCGTTTCT GCGTACCCGT GGCAATAGCC TGAAAACGGT CGGCCTGTAT
ATGCTGGTGG GCGCGATGCA GCTCGGTGTG ATGTATATGC TGAGTTTCCG CGCCTATCTC
TACCTGACGG TCTCCGAACT GTTGCTGTTC ACCGTACTGA CGCCGCTCTA CATCACGCTG
ATTTATGACA TCATGAGTAA GCGCCGTCTG CGCTGGGGCT ATGCTTTTAG CGCCTTGCTG
GCGGTGATTG GTGCCGGGAT TATTCGCTAT GATCAGGTCA CCGACCATTT CTGGACTGGC
TTATTGCTGG TGCAACTCTC CAATATCACT TTTGCCATCG GCATGGTGGG TTACAAACGT
CTGATGGAAA CTCGCCCGAT GCCGCAGCAT AACGCCTTTG CGTGGTTCTA TCTTGGCGCG
TTCCTGGTGG CAGTGATTGC ATGGTTCTTG CTAGGAAATG CGCAGAAAAT GCCGCAAACC
ACGTTGCAAT GGGGCATTCT GGTGTTTCTT GGCGTGGTGG CTTCCGGGAT TGGCTACTTT
ATGTGGAACT ACGGCGCGAC GCAGGTGGAC GCCGGAACGC TGGGCATTAT GAATAATATG
CACGTTCCGG CAGGGCTGCT GGTAAACCTG GCTATCTGGC ACCAACAGCC GCACTGGCCA
ACGTTTATTA CAGGCGCGCT GGTGATCCTG GCCTCACTGT GGGTGCATCG TAAGTGGGTC
GCTCCGCGCT CTTCACAAAC GGCAGATGAT CGCAGGCGTG ATTGCGCGCT GAACGAATAA
|
|---|
| Protein sequence | MALLIITTIL WAFSFSFYGE YLAGHVDSYF AVLVRVGLAA LVFLPFLRTR GNSLKTVGLY
MLVGAMQLGV MYMLSFRAYL YLTVSELLLF TVLTPLYITL IYDIMSKRRL RWGYAFSALL
AVIGAGIIRY DQVTDHFWTG LLLVQLSNIT FAIGMVGYKR LMETRPMPQH NAFAWFYLGA
FLVAVIAWFL LGNAQKMPQT TLQWGILVFL GVVASGIGYF MWNYGATQVD AGTLGIMNNM
HVPAGLLVNL AIWHQQPHWP TFITGALVIL ASLWVHRKWV APRSSQTADD RRRDCALNE
|
|---|
| |