| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3930 |
|---|
| Symbol | |
|---|
| ID | 6146715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4005888 |
|---|
| End bp | 4007024 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618756 |
|---|
| Product | auxiliary membrane fusion protein family transporter |
|---|
| Protein accession | YP_001745895 |
|---|
| Protein GI | 170682468 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.954749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCTAT TGATTGTTTT AACTTACGTG GCGCTGGCGT GGGCGGTCTT TAAAATCTTC
CGCATTCCGG TAAATCAGTG GACGCTGGCG ACGGCGGCGC TGGGAGGCGT GTTTCTGGTG
AGTGGTTTGA TTTTGTTGAT GAACTACAAC CACCCTTACA CTTTTACCGC GCAAAAGGCA
GTGATAGCGA TCCCCATCAC GCCACAGGTG ACGGGAATTG TTACTGAAGT CACCGACAAA
AATAATCAGC TTATTCAGAA GGGCGAGGTG CTTTTTAAGC TCGACCCGGT TCGTTACCAG
GCGCGAGTTG ACAGACTTCA GGCTGACCTG ATGACGGCGA CGCATAATAT AAAGACGCTG
CGCGCGCAGC TCACTGAAGC GCAGGCCAAC ACCACCCAGG TTTCAGCGGA GCGCGACCGT
CTGTTTAAAA ATTATCAACG TTACCTGAAA GGCAGCCAGG CGGCGGTGAA TCCGTTCTCG
GAACGTGACA TCGACGATGC GCGGCAAAAT TTCCTCGCGC AGGACGCGCT GGTGAAAGGC
TCGGTGGCGG AGCAGGCGCA GATCCAGAGC CAGCTCGACA GTATGGTTAA CGGCGAGCAG
TCGCAGATTG TGAGCTTAAG AGCGCAACTT ACTGAAGCAA AATATAACCT TGAGCAGACT
GTCATTCGCG CACCGAGCAA TGGCTACGTT ACTCAGGTAC TGATCCGCCC AGGTACATAC
GCAGCTGCCT TGCCGCTACG TCCGGTGATG GTTTTCATCC CCGAGCAAAA ACGGCAAATT
GTCGCCCAAT TTCGGCAGAA CTCGCTGTTA CGTCTGAAAC CCGGCGATGA TGCGGAAGTG
GTGTTTAACG CGCTACCTGG GCAGGTGTTC CACGGCAAAC TGACTAGTAT TTTACCTGTC
GTGCCAGGCG GTTCGTATCA GGCGCAAGGG GTACTGCAAT CATTAACCGT CGTGCCCGGC
ACGGACGGTG TGCTGGGAAC CATTGAACTG GACCCTAACG ATGATATCGA TGCTTTACCC
GACGGCATCT ACGCCCAGGT GGCAGTCTAC TCCGACCATT TCAGCCATGT TTCGGTGATG
CGGAAAGTGC TGCTAAGAAT GACCAGTTGG ATGCATTATC TTTATTTGGA TCATTAA
|
|---|
| Protein sequence | MDLLIVLTYV ALAWAVFKIF RIPVNQWTLA TAALGGVFLV SGLILLMNYN HPYTFTAQKA
VIAIPITPQV TGIVTEVTDK NNQLIQKGEV LFKLDPVRYQ ARVDRLQADL MTATHNIKTL
RAQLTEAQAN TTQVSAERDR LFKNYQRYLK GSQAAVNPFS ERDIDDARQN FLAQDALVKG
SVAEQAQIQS QLDSMVNGEQ SQIVSLRAQL TEAKYNLEQT VIRAPSNGYV TQVLIRPGTY
AAALPLRPVM VFIPEQKRQI VAQFRQNSLL RLKPGDDAEV VFNALPGQVF HGKLTSILPV
VPGGSYQAQG VLQSLTVVPG TDGVLGTIEL DPNDDIDALP DGIYAQVAVY SDHFSHVSVM
RKVLLRMTSW MHYLYLDH
|
|---|
| |