| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3763 |
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| Symbol | nikD |
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| ID | 6142754 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3828763 |
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| End bp | 3829527 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641618589 |
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| Product | nickel transporter ATP-binding protein NikD |
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| Protein accession | YP_001745729 |
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| Protein GI | 170683361 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR02770] nickel import ATP-binding protein NikD |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 64 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGCAAC AGATTGAACT ACGTAATATC GCGCTACAGG CCGCGCAGCC GCTGGTGCAC
GGCGTATCGT TAACCCTTAA ACGCGGGCGT GTGCTGGCGT TAGTCGGCGG TAGCGGCAGC
GGGAAATCAC TGACCTGCGC CGCGACGCTG GGCATTCTGC CCGCAGGCGT TCGCCAGACG
GCGGGGGAAA TTTTAGCCGA TGGCAAACCG GTTTCTCCCT GTGCCCTGCG CGGCATCAAA
ATTGCCACCA TCATGCAGAA CCCGCGCAGT GCCTTTAATC CGCTTCACAC CATGCACACC
CACGCGCGGG AAACCTGCCT GGCGCTGGGG AAACCCGCCG ATGACGCTAC GCTTACCGCT
GCCATAGAAG CGGTGGGGCT GGAAAACGCC GCACGCGTGC TGAAGCTGTA CCCGTTTGAG
ATGAGCGGCG GCATGTTGCA GCGCATGATG ATTGCGATGG CGGTGTTGTG TGAATCGCCG
TTTATCATCG CCGATGAACC GACCACCGAT CTCGACGTGG TAGCACAGGC GCGCATTCTC
GATCTGCTGG AAAGCATTAT GCAAAAACAA GCACCGGGAA TGCTGCTGGT GACCCATGAT
ATGGGCGTTG TGGCGCGTCT GGCGGATGAC GTGGCGGTGA TGTCACACGG TAAAATTGTC
GAACAGGGCG ATGTAGAAAC GCTGTTTAAT GCCCCCAAAC ATGCGGTAAC GCGCAGCCTG
GTTTCCGCTC ATCTCGCCCT CTACGGTATG GAGCTGGCAT CATGA
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| Protein sequence | MPQQIELRNI ALQAAQPLVH GVSLTLKRGR VLALVGGSGS GKSLTCAATL GILPAGVRQT
AGEILADGKP VSPCALRGIK IATIMQNPRS AFNPLHTMHT HARETCLALG KPADDATLTA
AIEAVGLENA ARVLKLYPFE MSGGMLQRMM IAMAVLCESP FIIADEPTTD LDVVAQARIL
DLLESIMQKQ APGMLLVTHD MGVVARLADD VAVMSHGKIV EQGDVETLFN APKHAVTRSL
VSAHLALYGM ELAS
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