| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3677 |
|---|
| Symbol | |
|---|
| ID | 6146079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 3735460 |
|---|
| End bp | 3736128 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641618504 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001745644 |
|---|
| Protein GI | 170681347 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.413497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATCA ACATTGCCTG GCAGGACGTA GATACCGTTC TGCTGGATAT GGACGGCACG
TTGCTCGACC TCGCCTTCGA TAACTATTTC TGGCAAAAGC TGGTGCCTGA AACATGGGGC
GCGAAAAACG GGGTTACGCC ACAGGAAGCG ATGGAATATA TGCGCCAGCA ATATCACGAC
GTACAGCATA CGCTAAACTG GTACTGTCTT GATTACTGGA GTGAGCAACT GGGTCTGGAT
ATCTGTGCGA TGACCACCGA GATGGGACCG CGCGCCGTAC TGCGTGAAGA TACCATTCCG
TTTCTTGAGG CACTGAAAGC CAGCGGTAAG CAGCGAATTT TGCTCACCAA TGCGCATCCG
CACAACCTGG CGGTAAAACT TGAGCATACC GGTCTGGACG CACACCTTGA TTTATTACTT
TCCACCCACA CATTTGGTTA TCCGAAAGAG GATCAGCGGT TATGGCATGC GGTGGCCGAA
GCTACGGGTC TTAAAGCTGA AAGAACGCTG TTTATTGATG ACAGCGAAGC GATTCTCGAT
GCTGCCGCGC AATTTGGTAT TCGTTACTGC CTCGGTGTGA CTAATCCTGA CTCCGGGATT
GCCGAGAAAC AGTATCAACG CCATCCGTCA CTGAATGACT ACCGCCGCCT GATCCCCTCG
CTAATGTGA
|
|---|
| Protein sequence | MHINIAWQDV DTVLLDMDGT LLDLAFDNYF WQKLVPETWG AKNGVTPQEA MEYMRQQYHD
VQHTLNWYCL DYWSEQLGLD ICAMTTEMGP RAVLREDTIP FLEALKASGK QRILLTNAHP
HNLAVKLEHT GLDAHLDLLL STHTFGYPKE DQRLWHAVAE ATGLKAERTL FIDDSEAILD
AAAQFGIRYC LGVTNPDSGI AEKQYQRHPS LNDYRRLIPS LM
|
|---|
| |