| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3531 |
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| Symbol | degS |
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| ID | 6146247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3609125 |
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| End bp | 3610192 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618360 |
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| Product | serine endoprotease |
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| Protein accession | YP_001745507 |
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| Protein GI | 170683919 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00943485 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGTGA AGCTCTTACG TTCCGTTGCG ATTGGATTAA TTGTCGGCGC TATTCTGCTG
GTTGCCATGC CTTCGCTGCG CAGCCTTAAC CCGCTTTCCA CTCCGCAATT TGACAGTACC
GATGAGACGC CTGCCAGCTA TAATCTGGCG GTTCGCCGCG CCGCGCCAGC GGTGGTTAAC
GTTTACAACC GTGGTTTGAA CACCAACTCT CACAACCAGC TTGAGATCCG CACCCTGGGA
TCCGGTGTAA TCATGGATCA ACGCGGTTAT ATCATCACCA ATAAACACGT CATCAACGAC
GCCGATCAGA TCATCGTCGC CTTACAAGAT GGACGTGTAT TTGAAGCATT GCTGGTGGGA
TCTGACTCTC TAACCGATCT GGCGGTACTT AAAATTAATG CCACTGGCGG TTTACCTACC
ATTCCAATTA ATGCACGTCG CGTACCGCAC ATTGGTGACG TGGTACTGGC GATCGGTAAC
CCGTACAACC TCGGGCAGAC CATTACCCAG GGGATTATTA GTGCCACGGG TCGAATCGGT
CTGAACCCGA CCGGGCGGCA AAACTTCCTG CAAACCGATG CTTCCATTAA CCACGGTAAC
TCTGGCGGCG CGCTGGTGAA CTCGCTGGGC GAACTGATGG GCATTAACAC GCTGTCGTTT
GATAAGAGTA ACGATGGCGA AACGCCGGAA GGTATCGGCT TTGCGATTCC TTTCCAGTTA
GCAACCAAAA TTATGGATAA ACTGATCCGC GATGGTCGCG TGATCCGCGG CTACATTGGT
ATCGGCGGAC GTGAGATCGC ACCACTGCAC GCGCAGGGCG GTGGTATAGA TCAACTGCAA
GGGATCGTGG TTAATGAAGT GTCACCTGAC GGCCCGGCGG CGAATGCGGG TATTCAGGTC
AATGATTTGA TTATTTCGGT GGATAACAAA CCGGCCATCT CTGCTCTGGA GACGATGGAT
CAGGTGGCGG AAATTCGCCC TGGCTCGGTG ATCCCGGTTG TAGTGATGCG TGATGATAAG
CAGTTAACGC TGCAGGTCAC CATTCAGGAA TATCCGGCAA CCAATTAA
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| Protein sequence | MFVKLLRSVA IGLIVGAILL VAMPSLRSLN PLSTPQFDST DETPASYNLA VRRAAPAVVN
VYNRGLNTNS HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG
SDSLTDLAVL KINATGGLPT IPINARRVPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG
LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GIGFAIPFQL
ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQGGGIDQLQ GIVVNEVSPD GPAANAGIQV
NDLIISVDNK PAISALETMD QVAEIRPGSV IPVVVMRDDK QLTLQVTIQE YPATN
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