Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2988 |
Symbol | lysR |
ID | 6147432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3067654 |
End bp | 3068589 |
Gene Length | 936 bp |
Protein Length | 311 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641617856 |
Product | DNA-binding transcriptional regulator LysR |
Protein accession | YP_001745008 |
Protein GI | 170682032 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.0261246 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGCCG TTAACTTACG TCATATTGAA ATTTTTCATG CGGTAATGAC CGCCGGAAGC CTGACTGAGG CGGCACACCT GCTACACACC TCACAGCCAA CTGTCAGCCG CGAACTGGCG CGCTTTGAGA AGGTGATCGG GCTGAAATTG TTTGAGCGCG TACGTGGACG ATTGCATCCT ACCGTGCAAG GACTGCGTCT GTTTGAAGAA GTGCAACGAT CCTGGTACGG ACTGGATCGC ATTGTCAGCG CCGCAGAAAG TCTGCGCGAG TTTCGCCAGG GAGAACTGTC TATTGCCTGC CTGCCGGTCT TTTCGCAATC TTTTTTACCG CAGCTCCTGC AACCCTTTCT GGCACGTTAT CCCGATGTCA GCTTAAATAT CGTGCCCCAG GAATCACCGC TACTTGAAGA GTGGCTCTCG GCCCAGCGTC ATGATTTAGG ACTCACTGAG ACACTCCATA CGCCTGCGGG AACAGAACGT ACCGAATTAC TCTCTTTAGA TGAAGTGTGT GTGTTACCTC CGGGTCATCC GCTGGCGGCA AAAGAGATAT TAACGCCAGA AGATTTTCAC AGTGAGAACT ACATCAGCCT TTCCCGTACT GACAGCTATC GCCAGTTGCT GGATCAATTG TTTACTGAAC ATCAGGTTAA ACGACGCATG ATCGTAGAAA CCCACAGCGC CGCGTCAGTC TGCGCAATGG TACGGGCGGG GGTAGGTGTT TCGGTGGTTA ACCCGCTCAC CGCACTGGAT TATGCGGCAA GCGGTTTAGT GGTGCGGCGG TTCAGTATTG CGGTTCCGTT CACCGTCAGC CTGATCCGCC CCCTGCACCG CCCGTCATCA GCGCTGGTGC AGGCGTTTAG TGAGCATTTA CAAGCGGGAT TACCGAAACT GGTCACTTCT CTTGACGCTA TTTTGTCGTC AGCTACGACA GCATAA
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Protein sequence | MAAVNLRHIE IFHAVMTAGS LTEAAHLLHT SQPTVSRELA RFEKVIGLKL FERVRGRLHP TVQGLRLFEE VQRSWYGLDR IVSAAESLRE FRQGELSIAC LPVFSQSFLP QLLQPFLARY PDVSLNIVPQ ESPLLEEWLS AQRHDLGLTE TLHTPAGTER TELLSLDEVC VLPPGHPLAA KEILTPEDFH SENYISLSRT DSYRQLLDQL FTEHQVKRRM IVETHSAASV CAMVRAGVGV SVVNPLTALD YAASGLVVRR FSIAVPFTVS LIRPLHRPSS ALVQAFSEHL QAGLPKLVTS LDAILSSATT A
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