| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2970 |
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| Symbol | ppdC |
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| ID | 6147250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3051072 |
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| End bp | 3051419 |
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| Gene Length | 348 bp |
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| Protein Length | 115 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641617839 |
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| Product | hypothetical protein |
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| Protein accession | YP_001744991 |
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| Protein GI | 170682705 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.254629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.0125225 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGTCCGCTG AAAGAGAGGG CGTTATGTCA GCTTCCCTGA AGAATCAACA AGGCTTTAGT
CTGCCGGAGG TAATGTTGGC GATGGTGTTG ATGGTGATGA TTGTCACTGC GTTATCGGGT
TTCCAGCGAA CATTAATGAA CAGTCTTGCC AGCAGAAACC AGTACCAACA GCTCTGGCGG
CATGGCTGGC AGCAAACGCA ACTGCGTGCG ATTTCGCCAC CTGCCAACTG GCAGGTCAAC
CGAATGCAGA CATCGCAGGC GGGATGTGTC AGCATCAACG TTACGCTAGT TTCACCCGGG
GGCAGAGAAG GCGAGATGAC CCGCCTGCAT TGCCCGAATC GTCAGTAG
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| Protein sequence | MSAEREGVMS ASLKNQQGFS LPEVMLAMVL MVMIVTALSG FQRTLMNSLA SRNQYQQLWR
HGWQQTQLRA ISPPANWQVN RMQTSQAGCV SINVTLVSPG GREGEMTRLH CPNRQ
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