| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2870 |
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| Symbol | truD |
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| ID | 6145553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2943453 |
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| End bp | 2944502 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641617739 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001744894 |
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| Protein GI | 170681051 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGAGT TCGATAATCT CACTTACCTC CACGGCAAAC CGCAAGGCAC CGGGCTGCTG
AAAGCGAATC CGGAAGACTT TGTGGTGGTG GAAGATTTGG GCTTTGAGCC TGATGGTGAA
GGTGAGCATA TTCTGGTTAG AATCCTCAAA AACGGCTGCA ATACCCGTTT TGTGGCGGAT
GCACTGGCGA AATTCCTGAA AATTCATGCC CGTGAAGTCA GCTTCGCTGG GCAAAAAGAT
AAACATGCTG TTACGGAACA GTGGTTATGC GCTCGCGTGC CGGGCAAAGA GATGCCCGAT
CTGAGCGCCT TTCAACTGGA AGGCTGCCAG GTGCTGGAGT ATGCGCGGCA CAAGCGCAAG
CTGCGTTTAG GGGCGCTGAA AGGTAACGCC TTTACCCTGG TACTACGCGA AGTGAGCAAT
CGCGATGACG TTGAACAACG TCTGATCGAT ATTTGCGTAA AAGGTGTACC GAACTACTTC
GGTGCCCAAC GTTTTGGGAT TGGCGGTAGC AACTTGCAGG GCGCGCTGCG CTGGGCGCAA
ACCAATACTC CGGTGCGCGA TCGCAATAAA CGGAGTTTTT GGTTGTCGGC AGCCCGCAGT
GCGTTGTTTA ATCAGATTGT TGCTGAGCGC CTCAAAAAAG CAGACGTTAA TCAAGTTGTT
GACGGCGATG CGCTACAATT AGCCGGACGT GGTAGCTGGT TTGTTGCAAC CACCGAAGAA
GTGGCGGAAT TACAGCGTCG CGTCAACGAT AAAGAGCTAA TGATAACCGC CGCATTGCCG
GGCAGTGGCG AATGGGGAAC TCAGCGTGAA GCGCTGGCAT TCGAACAAGC AGCTGTCGCC
GCAGAAACTG AATTACAAGC TTTACTGGTG CGCGAAAAAG TTGAAGCCGC GCGCAGAGCG
ATGCTGCTGT ATCCGCAACA ATTAAGCTGG AACTGGTGGG ATGACGTCAC CGTAGAAATC
CGTTTCTGGC TTCCGGCGGG TAGTTTTGCA ACCAGCGTTG TCAGGGAACT TATCAACACA
ACAGGTGATT ATGCGCATAT TGCTGAGTAA
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| Protein sequence | MIEFDNLTYL HGKPQGTGLL KANPEDFVVV EDLGFEPDGE GEHILVRILK NGCNTRFVAD
ALAKFLKIHA REVSFAGQKD KHAVTEQWLC ARVPGKEMPD LSAFQLEGCQ VLEYARHKRK
LRLGALKGNA FTLVLREVSN RDDVEQRLID ICVKGVPNYF GAQRFGIGGS NLQGALRWAQ
TNTPVRDRNK RSFWLSAARS ALFNQIVAER LKKADVNQVV DGDALQLAGR GSWFVATTEE
VAELQRRVND KELMITAALP GSGEWGTQRE ALAFEQAAVA AETELQALLV REKVEAARRA
MLLYPQQLSW NWWDDVTVEI RFWLPAGSFA TSVVRELINT TGDYAHIAE
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