| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2783 |
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| Symbol | gabP |
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| ID | 6143172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2867868 |
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| End bp | 2869268 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641617652 |
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| Product | gamma-aminobutyrate transporter |
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| Protein accession | YP_001744812 |
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| Protein GI | 170680659 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | [TIGR01773] gamma-aminobutyrate permease |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.414998 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCAAT CATCGCAACC ACATGAGTTA GGCGGCGGGC TGAAGTCACG CCACGTCACC
ATGTTGTCTA TTGCCGGTGT TATCGGCGCA AGTCTGTTTG TCGGTTCCAG CGTCGCCATC
GCCGAAGCGG GCCCGGCGGT ATTACTGGCC TATCTGTTCG CCGGATTACT GGTGGTTATG
ATTATGCGGA TGTTGGCGGA AATGGCGGTT GCCACGCCCG ATACCGGTTC GTTTTCCACC
TATGCCGATA AAGCCATTGG CCGTTGGGCG GGCTATACCA TCGGCTGGTT GTACTGGTGG
TTTTGGGTAC TGGTTATCCC ACTGGAAGCC AACATCGCCG CCATGATCCT GCACTCGTGG
GTTCCAGGCA TTCCCATCTG GTTATTTTCC CTGGTCATTA CCCTCGCCTT GACTGGCAGT
AATTTATTAA GCGTTAAAAA CTACGGCGAA TTTGAGTTCT GGCTGGCGCT GTGCAAAGTC
ATCGCTATCC TGGCCTTTAT TTTCCTTGGT GCAGTCGCAA TTAGCGGTTT TTACCCTTAT
GCCGAAGTGA GCGGGATCTC AAGATTGTGG GATAGCGGCG GCTTTATGCC CAACGGCTTC
GGTGCGGTAT TAAGCGCGAT GTTGATCACC ATGTTCTCGT TTATGGGCGC AGAAATTGTC
ACTATTGCCG CCGCGGAATC TGACACGCCG GAAAAACATA TTGTCCGCGC CACCAACTCG
GTTATCTGGC GTATTTCTAT CTTCTATTTG TGCTCTATTT TTGTCGTCGT GGCATTAATA
CCGTGGAATA TGCCGGGGCT GAAAGCCGTT GGATCTTATC GCTCGGTTCT GGAGTTGCTC
AATATTCCCC ATGCGAAATT AATCATGGAC TGCGTGATAT TACTTTCCGT AACCAGTTGC
CTGAACTCGG CGCTGTATAC CGCTTCCAGA ATGCTCTACT CCTTAAGCCG TCGCGGTGAT
GCGCCCGCGG TAATGGGTAA AATCAACCGC AGTAAAACCC CGTATGTGGC GGTATTACTC
TCCACCGGCG CGGCATTTTT AACGGTGGTG GTGAATTATT ACGCGCCTGC GAAAGTGTTT
AAATTTCTGA TCGACAGCTC CGGTGCTATC GCCCTGCTGG TTTATTTAGT CATCGCCGTT
TCACAATTGC GGATGCGCAA AATTCTGCGA GCAGAAGGAA GCGAAATTCG CCTGCGGATG
TGGCTTTATC CGTGGCTCAC CTGGCTGGTC ATCGGCTTTA TTACCTTTGT GTTGGTAGTG
ATGCTATTCC GCCCGGCGCA ACAGTTAGAA GTGATCTCCA CCGGCTTATT AGCGATAGGG
ATTATCTGTA CCGTGCCAAT TATGGCTCGC TGGAAAAAGC TGGTATTGTG GCAAAAAACA
CCCGTTCATA ATACGCGCTG A
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| Protein sequence | MGQSSQPHEL GGGLKSRHVT MLSIAGVIGA SLFVGSSVAI AEAGPAVLLA YLFAGLLVVM
IMRMLAEMAV ATPDTGSFST YADKAIGRWA GYTIGWLYWW FWVLVIPLEA NIAAMILHSW
VPGIPIWLFS LVITLALTGS NLLSVKNYGE FEFWLALCKV IAILAFIFLG AVAISGFYPY
AEVSGISRLW DSGGFMPNGF GAVLSAMLIT MFSFMGAEIV TIAAAESDTP EKHIVRATNS
VIWRISIFYL CSIFVVVALI PWNMPGLKAV GSYRSVLELL NIPHAKLIMD CVILLSVTSC
LNSALYTASR MLYSLSRRGD APAVMGKINR SKTPYVAVLL STGAAFLTVV VNYYAPAKVF
KFLIDSSGAI ALLVYLVIAV SQLRMRKILR AEGSEIRLRM WLYPWLTWLV IGFITFVLVV
MLFRPAQQLE VISTGLLAIG IICTVPIMAR WKKLVLWQKT PVHNTR
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