| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2618 |
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| Symbol | dapE |
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| ID | 6147444 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2675916 |
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| End bp | 2677043 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641617489 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_001744654 |
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| Protein GI | 170683901 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTGCC CGGTTATTGA GCTGACACAA CAGCTTATTC GCCGCCCTTC CCTGAGTCCT
GATGACGCAG GATGCCAGGC TTTGTTGATT GAACGTTTGC AGGCGATCGG TTTTACCGTT
GAACGCATGG ACTTTGCCGA TACGCAGAAT TTTTGGGCAT GGCGTGGGCA AGGTGAAACG
TTAGCCTTTG CCGGGCATAC CGACGTGGTG CCGCCTGGCG ACGCCGACCG TTGGATCAAT
CCGCCGTTTG AACCCACCAT TCGTGACGGC ATGTTATTCG GGCGCGGTGC GGCAGATATG
AAAGGCTCGC TGGCGGCGAT GGTGGTAGCG GCAGAACGTT TTGTCGCACA ACATCCCAAC
CATACGGGGC GACTGGCATT TCTGATCACC TCTGATGAAG AAGCCAGTGC CCACAACGGT
ACGGTAAAAG TCGTCGAGGC GTTAATGGCA CGTAATGAGC GTCTCGATTA CTGCCTGGTC
GGCGAACCGT CGAGTATCGA AGTGGTAGGT GATGTGGTGA AAAATGGTCG TCGCGGATCA
TTAACCTGCA ACCTTACCAT TCATGGCGTT CAGGGGCATG TTGCCTACCC GCATCTGGCT
GACAATCCGG TACATCGCGC AGCACCTTTC CTTAATGAAT TAGTGGCTAT TGAGTGGGAT
CAGGGCAATG AATTTTTCCC GGCGACCAGT ATGCAGATTG CCAATATTCA GGCGGGAACG
GGCAGTAACA ACGTTATTCC GGGTGAACTG TTTGTGCAGT TTAACTTCCG CTTCAGCACC
GAACTGACGG ATGAGATGAT CAAAGCGCAG GTACTTGCCC TGCTTGAAAA ACATCAACTG
CGCTATACGG TGGATTGGTG GCTTTCCGGG CAGCCATTTT TGACCGCACG CGGTAAACTG
GTGGATGCGG TCGTTAACGC GGTTGAGCAC TATAATGAAA TTAAACCGCA GCTACTGACC
ACAGGCGGAA CGTCCGACGG GCGCTTTATT GCCCGCATGG GGGCGCAGGT GGTGGAACTC
GGGCCGGTCA ATGCCACTAT TCATAAAATT AATGAATGTG TGAACGCTGC CGACCTGCAG
CTACTTGCCC GTATGTATCA ACGTATCATG GAACAGCTCG TCGCGTGA
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| Protein sequence | MSCPVIELTQ QLIRRPSLSP DDAGCQALLI ERLQAIGFTV ERMDFADTQN FWAWRGQGET
LAFAGHTDVV PPGDADRWIN PPFEPTIRDG MLFGRGAADM KGSLAAMVVA AERFVAQHPN
HTGRLAFLIT SDEEASAHNG TVKVVEALMA RNERLDYCLV GEPSSIEVVG DVVKNGRRGS
LTCNLTIHGV QGHVAYPHLA DNPVHRAAPF LNELVAIEWD QGNEFFPATS MQIANIQAGT
GSNNVIPGEL FVQFNFRFST ELTDEMIKAQ VLALLEKHQL RYTVDWWLSG QPFLTARGKL
VDAVVNAVEH YNEIKPQLLT TGGTSDGRFI ARMGAQVVEL GPVNATIHKI NECVNAADLQ
LLARMYQRIM EQLVA
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