| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1834 |
|---|
| Symbol | eefC |
|---|
| ID | 6145102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1855128 |
|---|
| End bp | 1856501 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641616710 |
|---|
| Product | multidrug efflux outer membrane protein EefC |
|---|
| Protein accession | YP_001743888 |
|---|
| Protein GI | 170681888 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0000044393 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCGTC GTTCTCTTAT TTTTCTGGTG TTGTTGAGTG CGGGATGTGT CTCGCTCGAT
CCTCACTACA GTACGCCTGA ATCCCCAATC CCGGCGACCT TGCCGGGAGC ACAGGGCCAG
GGGAAGGCAA TCAGCCATGA CTGGCAGCAG GTGATTCACG ATCCCCGATT GCAGCAGGTA
GTAACCATTG CACTGAACAG TAACCGCGAT GTGCAAAAAG CGATTGCTGA TATTGACTCA
GCACGGGCGC TCTATGGGCA AACTAATGCG TCGTTATTTC CGACGGTGAA TGCGGCCTTA
AGTTCGACTC GCAGTCGTTC GCTGGCGAAT GGTACGGGAA CAACTGCCGA GGCTGACGGC
ACGGTGTCCA GTTATACGTT AGATCTGTTT GGTCGTAATC AGAGTTTATC TCGGGCGGCG
CGGGAAACCT GGCTTGCCAG TGAATTTACA GCCCAGAACA CTCGTTTAAC GCTGATTGCT
GAAATCAGCA CCGCCTGGCT GACACTGGCG GCTGATAACA GCAACCTGGC CCTGGCAAAA
GAAACGATGG CCAGTGCAGA AAACTCATTG AAAATTATCC AGCGCCAGCA ACAGGTTGGC
ACGGCGGCAG CGACAGATGT CAGTGAGGCG ATGAGTGTTT ATCAGCAAGC GCGCGCCAGC
GTTGCCAGCT ATCAGACACA AGTGATGCAG GATAAAAATG CGCTGAACTT ACTGGCAGGT
ACAACGCTTG CGGAAAATCT GCTACCGGGA ACACTGGAAA GCCTGCCGGA ACAAATGATA
AGTCTGGTTC CTGCGGGAGT ATCATCTGAT GTTCTGCTGC GTCGCCCGGA TATCCAGGAA
GCGGAACATA ATTTGAAGAG CGCCAATGCC GATATTGGCG CGGCACGGGC TAACTTTTTC
CCGACGATTT CGCTGACTGC CAGTGCCGGT GTTGGCAGTG ACGCGTTGTC GTCGTTGTTC
AGCCACGGAA TGCAGATCTG GTCATTTGCG CCATCGGTCA CATTACCGCT GTTTACTGGC
GGAAGTAATC TGGCGCAGCT TCGTTACGCA GAAGCACAAA AGCGTGGACT CATTGCCACC
TATGAAAAAA CCGTTCAGAG CGCATTTAAA GATGTCGCTA ACGCACTGGC GCGGCGGACC
ACGCTTGAAG AGCAACTGGA TGCACAGCGC CAGTATGTTA AAGCTGAACA ACAAACGGTC
GATGTTGGCT TGCGTCGCTA TCAGGCGGGT GTTGGTGATT ACCTGACCGT GTTGACGGCG
CAGCGCAGCT TGTGGAGCGC ACAGCAGGAG CTGCTGGCAC TGCAACTGAC TGATTTTACA
AACCGAATCA CGCTCTGGCA GTCGCTGGGC GGCGGCATGT CATCACTCAA GTAA
|
|---|
| Protein sequence | MLRRSLIFLV LLSAGCVSLD PHYSTPESPI PATLPGAQGQ GKAISHDWQQ VIHDPRLQQV
VTIALNSNRD VQKAIADIDS ARALYGQTNA SLFPTVNAAL SSTRSRSLAN GTGTTAEADG
TVSSYTLDLF GRNQSLSRAA RETWLASEFT AQNTRLTLIA EISTAWLTLA ADNSNLALAK
ETMASAENSL KIIQRQQQVG TAAATDVSEA MSVYQQARAS VASYQTQVMQ DKNALNLLAG
TTLAENLLPG TLESLPEQMI SLVPAGVSSD VLLRRPDIQE AEHNLKSANA DIGAARANFF
PTISLTASAG VGSDALSSLF SHGMQIWSFA PSVTLPLFTG GSNLAQLRYA EAQKRGLIAT
YEKTVQSAFK DVANALARRT TLEEQLDAQR QYVKAEQQTV DVGLRRYQAG VGDYLTVLTA
QRSLWSAQQE LLALQLTDFT NRITLWQSLG GGMSSLK
|
|---|
| |