| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1658 |
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| Symbol | lsrC |
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| ID | 6145153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1645575 |
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| End bp | 1646603 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641616534 |
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| Product | autoinducer-2 ABC transporter, permease protein LsrC |
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| Protein accession | YP_001743712 |
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| Protein GI | 170681527 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAAAT TTATTCAGAA CAACCGTGAA ATCACGGCAC TGCTGGCGGT GGTGCTGCTG
TTTGTATTAC CCGGTTTTCT CGACCGTCAG TATTTAAGTG TGCAAACGCT GACCATGGTT
TATAGCAGCG CGCAAATCCT GATCCTGCTG GCAATGGGCG CGACGCTGGT AATGCTTACG
CGCAATATTG ATGTTTCAGT GGGTTCGATT ACCGGAATGT GCGCGGTGCT GTTGGGGATG
TTACTGAACG CGGGGTATTC ACTACCTGTT GCTTGTGTCG CGACTTTACT GCTTGGTTTG
CTCGCGGGAT TTTTCAACGG TGTCCTGGTC GCGTGGCTAA AGATCCCTGC CATTGTTGCC
ACGCTCGGTA CATTAGGGTT GTACAGAGGC ATCATGTTGC TGTGGACTGG CGGTAAATGG
ATTGAGGGAT TACCCGCCGA ACTGAAACAA CTCTCCGCCC CGCTGCTGTT TGGCGTTTCC
GCGATTGGTT GGTTGACGAT AATTCTGGTG GCATTTATGG CCTGGCTGCT GGCAAAGACG
GCGTTTGGAC GCAGTTTTTA TGTCACGGGC GATAATTTAC AGGGCGCTCG TCAACTGGGC
GTTCGTACGG AAGCCATTCG CATTGTGGCA TTTTCGTTGA ACGGCTGCAT GGCGGCACTG
GCGGGAATTG TGTTTGCTTC GCAGATTGGT TTTATCCCCA ACCAGACCGG TACCGGGCTG
GAGATGAAAG CAATTGCAGC CTGCGTTCTG GGCGGCATTA GTTTGCTCGG CGGTTCCGGC
GCGATCATCG GTGCGGTACT CGGCGCATGG TTCCTGACGC AGATCGATAG TGTACTGGTG
CTGTTGCGCA TTCCGGCATG GTGGAATGAT TTTATCGCGG GCATGGTTCT GCTGGCGGTG
CTGGTGTTTG ATGGACGCCT GCGTTGTGCG CTGGAACGTA ATCTGCGGCG GCAAAAATAT
GCCCGCTTTA TGATGCCACC GCCACCCGTT AAACCCGCTT CGTCAGGTAA AAAACGGGAG
GCCGCGTAA
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| Protein sequence | MLKFIQNNRE ITALLAVVLL FVLPGFLDRQ YLSVQTLTMV YSSAQILILL AMGATLVMLT
RNIDVSVGSI TGMCAVLLGM LLNAGYSLPV ACVATLLLGL LAGFFNGVLV AWLKIPAIVA
TLGTLGLYRG IMLLWTGGKW IEGLPAELKQ LSAPLLFGVS AIGWLTIILV AFMAWLLAKT
AFGRSFYVTG DNLQGARQLG VRTEAIRIVA FSLNGCMAAL AGIVFASQIG FIPNQTGTGL
EMKAIAACVL GGISLLGGSG AIIGAVLGAW FLTQIDSVLV LLRIPAWWND FIAGMVLLAV
LVFDGRLRCA LERNLRRQKY ARFMMPPPPV KPASSGKKRE AA
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