| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1620 |
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| Symbol | rspB |
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| ID | 6143563 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1609913 |
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| End bp | 1610932 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641616496 |
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| Product | putative dehydrogenase |
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| Protein accession | YP_001743674 |
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| Protein GI | 170681959 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00863317 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 76 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAGCA TTTTAATTGA AAAACCGAAT CAACTGGCAA TTATCGAACG CGAAATACCC
ACCCCGTCAG CGGGTGAAGT ACGAGTAAAA GTGAAACTTG CCGGAATTTG TGGTTCAGAT
AGCCATATTT ATCGTGGGCA TAATCCTTTT GCGAAATATC CGCGCGTCAT TGGACATGAA
TTCTTTGGCG TCATTGATGC AGTGGGTGAA GGCGTGGAAA GCGACAGAGT CGGTGAACGC
GTTGCTGTCG ATCCGGTGGT CAGCTGTGGG CATTGCTATC CGTGCTCTAT AGGTAAGCCG
AACGTTTGTA CGACACTGGC TGTATTAGGT GTGCACGCTG ACGGTGGTTT CAGTGAATAT
GCCGTGGTGC CGGCAAAAAA TGCGTGGAAA ATTCCTGAAG CAGTGGCCGA TCAATATGCG
GTGATGATTG AACCTTTTAC CATTGCGGCT AACGTTACCG GTCATGGTCA ACCGACTGAA
AATGATACCG TTCTGGTTTA CGGTGCAGGT CCAATCGGCC TGACGATCGT TCAGGTATTA
AAAGGCGTCT ATAACGTTAA GAATGTGATT GTTGCCGATC GCATTGATGA ACGACTGGAA
AAAGCGAAAG AGAGCGGGGC AGACTGGGCG ATTAATAACA GCCAGACACC GCTTAGCGAG
AGTTTCGCTG AAAAAGGCAT CAAGCCGACA TTAATTATCG ATGCGGCTTG TCATCCTTCA
ATCCTGAAAG AAGCCGTAAC GCTGGCTTCT CCAGCGGCAC GTATTGTATT GATGGGCTTC
TCCAGTGAAC CGTCTGAAGT GATTCAGCAA GGAATTACCG GAAAAGAACT CTCTATTTTC
TCTTCACGCT TAAATGCAAA TAAATTCCCG GTCGTTATCG ACTGGTTAAG TAAAGGGTTA
ATTAAACCAG AAAAACTAAT TACCCATACG TTTGATTTCC AGCATGTTGC TGATGCCATT
AGTTTATTTG AACAGGATCA AAAGCATTGC TGCAAAGTCT TACTCACTTT TTCTGAATAA
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| Protein sequence | MKSILIEKPN QLAIIEREIP TPSAGEVRVK VKLAGICGSD SHIYRGHNPF AKYPRVIGHE
FFGVIDAVGE GVESDRVGER VAVDPVVSCG HCYPCSIGKP NVCTTLAVLG VHADGGFSEY
AVVPAKNAWK IPEAVADQYA VMIEPFTIAA NVTGHGQPTE NDTVLVYGAG PIGLTIVQVL
KGVYNVKNVI VADRIDERLE KAKESGADWA INNSQTPLSE SFAEKGIKPT LIIDAACHPS
ILKEAVTLAS PAARIVLMGF SSEPSEVIQQ GITGKELSIF SSRLNANKFP VVIDWLSKGL
IKPEKLITHT FDFQHVADAI SLFEQDQKHC CKVLLTFSE
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