| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1570 |
|---|
| Symbol | rnfC |
|---|
| ID | 6147157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1553713 |
|---|
| End bp | 1555743 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641616447 |
|---|
| Product | electron transport complex protein RnfC |
|---|
| Protein accession | YP_001743625 |
|---|
| Protein GI | 170682353 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4656] Predicted NADH:ubiquinone oxidoreductase, subunit RnfC |
|---|
| TIGRFAM ID | [TIGR01945] electron transport complex, RnfABCDGE type, C subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.133646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGT TATTCTCTGC ATTCAGAAAA AATAAAATCT GGGATTTCAA CGGCGGCATC
CATCCACCGG AGATGAAAAC CCAGTCCAAC GGTACGCCCC TGCGCCAGGT ACCACTGGCG
CAGCGTTTTG TCATACCACT GAAACAACAT ATTGGCGCTG AAGGTGAGTT GTGCGTTAGC
GTCGGCGATA AAGTACTGCG CGGCCAGCCG CTTACCCGTG GACGCGGCAA AATGCTGCCG
GTTCACGCGC CCACCTCGGG TACCGTTACG GCTATTGCGC CCCACTCTAC GGCTCATCCT
TCAGCTTTAG CTGAATTAAG CGTGATTATT GATGCCGATG GCGAAGACTG CTGGATCCCG
CGCGACGGCT GGGACGATTA TCGCTCTCGC AGTCGCGAAG AGTTAATTGA GCGCATTCAT
CAGTTTGGTG TTGCCGGGCT GGGTGGTGCG GGATTCCCGA CAGGCGTTAA ATTGCAGGGT
GGCGGAGATA AGATTGAAAC GTTGATTATC AACGCTGCTG AGTGCGAGCC GTACATTACC
GCCGATGACC GTTTGATGCA GGATTGCGCG GCTCAGGTCG TAGAGGGTAT TCGCATTCTT
GCGCATATTC TGCAGCCACG CGAAATTCTT ATCGGCATTG AAGATAACAA ACCGCAGGCG
ATTTCCATGC TGCGCGCGGT GCTGGCGGAC TCTCACGATA TTTCTCTGCG GGTGATTCCA
ACCAAATATC CTTCTGGCGG TGCTAAACAA TTAACCTACA TTCTGACCGG GAAGCAGGTT
CCACATGGCG GGCGTTCATC CGATATCGGC GTATTAATGC AAAACGTCGG CACTGCTTAT
GCAGTGAAAC GTGCCGTTAT TGATGGCGAG CCGATTACCG AGCGTGTCGT AACCCTGACT
GGCGAAGCAA TCGCTCGCCC GGGCAACGTC TGGGCACGGC TGGGGACGCC CGTGCGTCAT
TTATTGAATG ACGCCGGATT CTGCCCCTCT GCCGATCAAA TGGTGATTAT GGGCGGCCCG
TTAATGGGCT TTACCTTGCC ATGGCTGGAT GTCCCGGTCG TAAAGATTAC CAACTGTCTG
TTGGCTCCCT CTGCCAATGA GCTTGGCGAA CCACAGGAAG AACAAAATTG CATCCGTTGT
AGTGCCTGTG CTGACGCCTG CCCTGCGGAT CTTTTGCCGC AACAGCTATA CTGGTTCAGC
AAAGGTCAGC AACACGATAA AGCCACCACG CATAACATTG CCGACTGCAT TGAATGTGGA
GCTTGCGCGT GGGTTTGCCC GAGCAATATT CCCCTGGTGC AATATTTCCG CCAGGAAAAA
GCTGAAATTG CGGCTATTCG TCAGGAAGAA AAGCGCGCCG CAGAAGCCAA AGCGCGTTTC
GAAGCGCGCC AGGCTCGTCT GGAGCGCGAA AAAGCGGCTC GCCTTGAACG ACATAAGAGC
GCAGCCGTTC AACCTGCAGC CAAAGATAAA GATGCGATTG CTGCCGCTCT GGCGCGGGTG
AAAGAGAAAC AGGCCCAGGC TACACAGCCT ATTGTGATTA AAGCGGGCGA ACGCCCGGAT
AACAGTGCAA TTATTGCAGC ACGGGAAGCC CGTAAAGCGC AAGCCAGAGC GAAACAGGCA
GAACTGCAGC AAACTAACGA CGCTGCAACC GTTGCTGATC CACGTAAAAC TGCAGTTGAA
GCGGCTATCG CCCGCGCCAA AGCGCGCAAG CTGGAACAGC AACAGGCTAA TGCGGAACCA
GAACAACAGG TCGATCCGCG CAAAGCCGCC GTCGAAGCCG CTATTGCCCG TGCCAAAGCA
CGCAAGCTGG AACAGCAACA GGCTAACGCA GAGCCAGAAC AACAGGTCGA TCCGCGCAAA
GCCGCCGTCG AAGCCGCTAT TGCCCGTGCC AAAGCGCGCA AACTGGAACA GCAACAGGCT
AATGCGGAGC CAGAAGAACA GGTTGATCCG CGCAAAGCGG CAGTTGCCGC GGCTATTGCC
CGCGTTCAGG CCAAAAAAGC CGCCCAGCAA AAGGTTGTAA ACGAGGACTA A
|
|---|
| Protein sequence | MLKLFSAFRK NKIWDFNGGI HPPEMKTQSN GTPLRQVPLA QRFVIPLKQH IGAEGELCVS
VGDKVLRGQP LTRGRGKMLP VHAPTSGTVT AIAPHSTAHP SALAELSVII DADGEDCWIP
RDGWDDYRSR SREELIERIH QFGVAGLGGA GFPTGVKLQG GGDKIETLII NAAECEPYIT
ADDRLMQDCA AQVVEGIRIL AHILQPREIL IGIEDNKPQA ISMLRAVLAD SHDISLRVIP
TKYPSGGAKQ LTYILTGKQV PHGGRSSDIG VLMQNVGTAY AVKRAVIDGE PITERVVTLT
GEAIARPGNV WARLGTPVRH LLNDAGFCPS ADQMVIMGGP LMGFTLPWLD VPVVKITNCL
LAPSANELGE PQEEQNCIRC SACADACPAD LLPQQLYWFS KGQQHDKATT HNIADCIECG
ACAWVCPSNI PLVQYFRQEK AEIAAIRQEE KRAAEAKARF EARQARLERE KAARLERHKS
AAVQPAAKDK DAIAAALARV KEKQAQATQP IVIKAGERPD NSAIIAAREA RKAQARAKQA
ELQQTNDAAT VADPRKTAVE AAIARAKARK LEQQQANAEP EQQVDPRKAA VEAAIARAKA
RKLEQQQANA EPEQQVDPRK AAVEAAIARA KARKLEQQQA NAEPEEQVDP RKAAVAAAIA
RVQAKKAAQQ KVVNED
|
|---|
| |