| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1515 |
|---|
| Symbol | sufD |
|---|
| ID | 6143053 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1501073 |
|---|
| End bp | 1502344 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641616393 |
|---|
| Product | cysteine desulfurase activator complex subunit SufD |
|---|
| Protein accession | YP_001743573 |
|---|
| Protein GI | 170680131 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
|---|
| TIGRFAM ID | [TIGR01981] FeS assembly protein SufD, group 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.252227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.00000429728 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGCT TACCGAACAG CAGTAACGCA CTGCAACAGT GGCATCATTT GTTTGAAGCT
GAAGTGGCGA AACGCTCCCC GCAAGCACAG CAGCATTTAC AACAATTGCT GCGTACCGGA
CTGCCGACAC GTAAACATGA AAACTGGAAA TATACGCCGC TGGAAGGGCT GACCAATAGC
CGGTTTGTCA GCATTGCGGG AGAGATATCC CCACAGCAGC GAGATGCCTT AGCGTTAACG
TTAGACGCCG TGCGGCTGGT GTTTGTCGAT GGACGTTACG TGTCAGCACT GAGCGATGCG
ACTGAAGGCA GCGGGTATGA AGTGAGCATT AACGACGACC GTCAGGGGTT ACCCGACGCT
ATTCAGGCGG AAGTGTTTCT GCATTTGACG GAAAGCCTGG CGCAAAGCGT GACGCATATC
GCCGTGAAGC GCGGTCAACG ACCGGCAAAG CCATTGCTGT TAATGCATAT CACCCAGGGC
GTGGCAGGTG AAGAGGTGAA TACTGCCCAT TACCGACATC ATCTGGATCT GGCGGAAGGT
GCCGAAGCAA CGGTGATCGA ACATTTTGTC AGCCTTAATG ATGCTCGTCA CTTCACCGGC
GCACGGTTCA CTATCAACGT CGCAGCGAAC GCCCACTTGC AGCATATCAA GCTGGCGTTT
GAAAACCCGG TCAGTCACCA CTTTGCCCAT AACGATTTGT TGCTGGCTGA CGATGCCACC
GCATTTAGCC ACAGTTTCCT GCTGGGTGGC GCAGTGTTAC GACACAACAC CAGTACGCAA
CTCAATGGCG AAAACAGCAC GCTGCGGATC AATAGCCTGG CGATGCCGGT GAAAAACGAG
GTGTGTGATA CCCGTACCTG GCTGGAACAC AATAAAGGTT TTTGTAACAG TCGACAGTTG
CATAAAACTA TCGTCAGCGA CAAAGGCCGC GCGGTATTTA ACGGTTTGAT CAACGTCGCG
CAGCACGCCA TCAAAACGGA TGGTCAGATG ACCAACAATA ATCTGCTGAT GGGCAAACTG
GCGGAAGTGG ATACGAAACC GCAGCTGGAA ATCTATGCAG ATGATGTGAA ATGCAGCCAC
GGCGCGACGG TGGGGCGTAT TGATGATGAA CAGATGTTCT ATCTGCGCTC GCGCGGGATC
AATCAGCAGG ATGCCCAGCA GATGATCATT TACGCCTTTG CTGCTGAACT GACGGAAGCA
CTGCGTGATG AGGGTCTTAA ACAGCAGGTG CTGGCCCGAA TCGGTCAACG GCTGCCAGGA
GGTGCAAGAT GA
|
|---|
| Protein sequence | MAGLPNSSNA LQQWHHLFEA EVAKRSPQAQ QHLQQLLRTG LPTRKHENWK YTPLEGLTNS
RFVSIAGEIS PQQRDALALT LDAVRLVFVD GRYVSALSDA TEGSGYEVSI NDDRQGLPDA
IQAEVFLHLT ESLAQSVTHI AVKRGQRPAK PLLLMHITQG VAGEEVNTAH YRHHLDLAEG
AEATVIEHFV SLNDARHFTG ARFTINVAAN AHLQHIKLAF ENPVSHHFAH NDLLLADDAT
AFSHSFLLGG AVLRHNTSTQ LNGENSTLRI NSLAMPVKNE VCDTRTWLEH NKGFCNSRQL
HKTIVSDKGR AVFNGLINVA QHAIKTDGQM TNNNLLMGKL AEVDTKPQLE IYADDVKCSH
GATVGRIDDE QMFYLRSRGI NQQDAQQMII YAFAAELTEA LRDEGLKQQV LARIGQRLPG
GAR
|
|---|
| |