Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1388 |
Symbol | ttuC |
ID | 6145597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1377313 |
End bp | 1378398 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641616266 |
Product | tartrate dehydrogenase/decarboxylase |
Protein accession | YP_001743446 |
Protein GI | 170679663 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.253968 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.832846 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAAAA CGATCCGTAT TGCTGCGATC CCGGGAGACG GGATTGGCAA AGAAGTCCTT CCTGAAGGGA TTCGCGTGTT AAAGGCTGCC GCTGAGCGCT GGGGCTTCGC CTTGAGTTTT GAGCAAATGG AGTGGGCGAG CTGCGAGTAT TACAGCCATC ACGGTAAAAT GATGCCGGAC GACTGGCATG AGCAACTTAG CCGTTTCGAC GCCATCTATT TTGGTGCCGT CGGCTGGCCG GATACCGTTC CGGACCATAT TTCGTTGTGG GGTTCGCTGC TGAAATTTCG TCGTGAGTTC GACCAGTACG TCAACCTGCG CCCGGTTCGT CTCTTTCCTG GCGTTCCCTG CCCGCTGGCG GGAAAACAGC CTGGCGACAT CGATTTTTAC GTGGTCAGGG AAAACACCGA AGGAGAATAT TCCTCGCTCG GCGGTAGAGT GAATGAAGGT ACAGAGCATG AAGTCGTCAT TCAGGAATCG GTATTTACGC GTCGTGGTGT CGATCGCATT TTGCGTTATG CCTTTGAACT TGCACAAAGC CGCCCACGTA AGACGCTAAC TTCTGCAACT AAATCGAACG GTTTAGCCAT CAGCATGCCG TACTGGGATG AGCGAGTGGA AGCAATGGCC GAGAATTACC CGGAGATCTG CTGGGACAAG CAGCATATTG ATATTCTCTG CGCGCGTTTT GTGATGCAGC CGGAACGCTT CGATGTGGTG GTGGCGTCCA ATTTGTTTGG CGATATCCTT TCCGATCTTG GCCCGGCCTG CACCGGCACC ATTGGCATTG CCCCATCCGC CAACCTGAAT CCGGAACGCA CTTTCCCGTC GCTCTTCGAG CCAGTCCACG GTTCCGCGCC GGATATCTAC GGGAAAAACA TTGCTAACCC TATCGCCACA ATTTGGGCCG GTGCAATGAT GCTCGATTTT CTCGGCAATG GCGATGAGCG TTTCCAGCAA GCGCATAACG GTATTCTGGC CGCGATTGAA GAAGTGATTG CTCACGGGCC GAAAACACCT GATATGAAAG GCAATGCCAC CACGCCACAG GTTGCCGACG CGATTTGCAA AATTATTTTG CGTTAA
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Protein sequence | MMKTIRIAAI PGDGIGKEVL PEGIRVLKAA AERWGFALSF EQMEWASCEY YSHHGKMMPD DWHEQLSRFD AIYFGAVGWP DTVPDHISLW GSLLKFRREF DQYVNLRPVR LFPGVPCPLA GKQPGDIDFY VVRENTEGEY SSLGGRVNEG TEHEVVIQES VFTRRGVDRI LRYAFELAQS RPRKTLTSAT KSNGLAISMP YWDERVEAMA ENYPEICWDK QHIDILCARF VMQPERFDVV VASNLFGDIL SDLGPACTGT IGIAPSANLN PERTFPSLFE PVHGSAPDIY GKNIANPIAT IWAGAMMLDF LGNGDERFQQ AHNGILAAIE EVIAHGPKTP DMKGNATTPQ VADAICKIIL R
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